SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68239

Length: 644 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene68239

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transferase, transferring glycosyl groups, putative	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	glycosyltransferase-like protein	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Fringe-like	IPR003378	-	-
Sma3	POX	IPR006563	-	-
Sma3	Protein of unknown function DUF604	IPR006740	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
171	33		66		0.997476
173		66		33	0.997476
174	33		66		0.997476
175			33	66	0.997476
176	33		66		0.997476
178		66		33	0.997476
189	33	66			0.997458
190	66	33			0.997471
195	66	33			0.997471
275			75	25	0.996483
277	25	75			0.996479
278		25		75	0.996479
280		66		33	0.997452
281		75		25	0.99649
282		75	25		0.99649
284	66	33			0.997452
292		33	66		0.997452
293	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain