SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene67903

Length: 336 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene67903
GAGTTGGATCCTAACAATTCAGCACCCTATGTTGTGCTCTCTAACCTCTATGCCACAGCTGGCAGGTGGGTGACATTGAAAAATACGTAGATTAATGAAGGGCAAGAAGGTAAAAAGAAACCTGGGTGTAGTTGGATTGAGATCAACAAAAGGGTGCATTCTTTCCTCATAGGAGACAAACCACACAAGGAGACGGAAAATTCGTGAATGGTCCGAAAGATTACAAGGGGAAGATGTATGTGGCAGGGTATGTGCCTGACATGAACTGTCTTCTGAATGGCACTGTAGAATTGTAAACAATTATTTGGATTAAAAACCTGATTGTTTTCACCAAAA

Ace file of the UniGene sp_v2.0_unigene67903 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SN39.1\|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18750, chloroplastic; Flags: Precursor emb\|CAB37460.1\| putative protein [Arabidopsis thaliana] emb\|CAB	-	-	2.0e-11	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.11347e-16	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	1.11347e-16	67%
Blast2go	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	1.11347e-16	67%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	1.11347e-16	67%
Blast2go	leaf development	GO:0048366	Biological Process	1.11347e-16	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 63 aas, your sequence is shorter than subject: 69 - 246

Fln protein: ELDPNNSAPYVVLSNLYATAGRWVTLKNT*INEGQEGKKKPGCSWIEINKRVHSFLIGDKPHKETENS*

Protein Length: 70

Fln nts: GAGTTGGATCCTAACAATTCAGCACCCTATGTTGTGCTCTCTAACCTCTATGCCACAGCTGGCAGGTGGGTGACATTGAAAAATACGTAGATTAATGAAGGGCAAGAAGGTAAAAAGAAACCTGGGTGTAGTTGGATTGAGATCAACAAAAGGGTGCATTCTTTCCTCATAGGAGACAAACCACACAAGGAGACGGAAAATTCGTGAATGGTCCGAAAGATTACAAGGGGAAGATGTATGTGGCAGGGTATGTGCCTGACATGAACTGTCTTCTGAATGGCACTGTAGAATTGTAAACAATTATTTGGATTAAAAACCTGATTGTTTTCACCAAAA

Fln Alignment:

AllPineV4_rep_c93449___ELDPNNSAPYVVLSNLYATAGRWVTL-KNT*INEGQEGKKKPGCSWIEINKRVHSFLIGDKPHKETE
D5AAE0_______________QLEPHNAAKYVLLSNIYAAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVEDKSHPQTE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain