SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene67589

Length: 560 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene67589
AATGTCTTGGAGTTATCCCTGGTTTTGGTGGTACACAGCGGCTTCCACGCCTAGTGGGCCTTTCAAAGGCACTTGAAATGATACTTTTGTCGAAACCGATCAAATCTGAAGAGGCTAGTGAGTTGGGGCTTGTGGATGCTGTAGTCCCACCTGTGGAATTGCTAAACACAGCTCGTCGCTGGGCATTGGACATTGCAGAGTTTCGAAGGCCTTGGATAAGAAGCCTTTACCGGACCGACAAGTTAGAACCTTTGGGAGAGGCACGTGAAATCCTAAAATTTGCACGAATTCAAGCACAAAAGAGAGCTGCTAATCTCAAACATCCACTTGTTTGCCTCGATGTCATTGAGGAGGGAATTGTATCTGGACCAATGGCCGGCTTGCTAAAGAATTGGAAAGTTGGAATGTGGTCTAGGTTTGGCTTCACTAATACCTTCTGAGTTGAGGAAAGAAATTTTGTTTACTGCCCAAAATTATGATTAAAACTTAGGATTGACTGGCTCTAAGCAAGGATTTTTTATATTGGTATTCGACAAAGAAGATTACAAACAGGTCTAAAA

Ace file of the UniGene sp_v2.0_unigene67589 (antisense)

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative fatty acid beta-oxidation multifunctional protein [Oryza sativa Japonica Group]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	glyoxysomal fatty acid beta-oxidation multifunctional protein mfp-a	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Long-chain-enoyl-CoA hydratase.	EC:4.2.1.74	-	0.0	87%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid elongation in mitochondria	00062		87%
Blast2go	Fatty acid metabolism	00071		87%
Blast2go	Metabolic pathways	01100		87%
Blast2go	3-hydroxyacyl-CoA dehydrogenase.	EC:1.1.1.35	-	87%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid elongation in mitochondria	00062		87%
Blast2go	Fatty acid metabolism	00071		87%
Blast2go	Primary bile acid biosynthesis	00120		87%
Blast2go	Valine, leucine and isoleucine degradation	00280		87%
Blast2go	Geraniol degradation	00281		87%
Blast2go	Lysine degradation	00310		87%
Blast2go	Tryptophan metabolism	00380		87%
Blast2go	Toluene degradation	00623		87%
Blast2go	Butanoate metabolism	00650		87%
Blast2go	Carbon fixation pathways in prokaryotes	00720		87%
Blast2go	Biosynthesis of plant hormones	01070		87%
Blast2go	Metabolic pathways	01100		87%
Blast2go	Biosynthesis of secondary metabolites	01110		87%
Blast2go	Enoyl-CoA hydratase.	EC:4.2.1.17	-	87%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid elongation in mitochondria	00062	87%
Blast2go	Fatty acid metabolism	00071	87%
Blast2go	Valine, leucine and isoleucine degradation	00280	87%
Blast2go	Geraniol degradation	00281	87%
Blast2go	Lysine degradation	00310	87%
Blast2go	Benzoate degradation	00362	87%
Blast2go	Tryptophan metabolism	00380	87%
Blast2go	beta-Alanine metabolism	00410	87%
Blast2go	alpha-Linolenic acid metabolism	00592	87%
Blast2go	Aminobenzoate degradation	00627	87%
Blast2go	Propanoate metabolism	00640	87%
Blast2go	Butanoate metabolism	00650	87%
Blast2go	Limonene and pinene degradation	00903	87%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	87%
Blast2go	Biosynthesis of plant hormones	01070	87%
Blast2go	Metabolic pathways	01100	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	87%
Blast2go	long-chain-enoyl-CoA hydratase activity	GO:0016508	Molecular Function	87%
Blast2go	3-hydroxyacyl-CoA dehydrogenase activity	GO:0003857	Molecular Function	87%
Blast2go	enoyl-CoA hydratase activity	GO:0004300	Molecular Function	87%
Blast2go	cell wall	GO:0005618	Cellular Component	87%
Blast2go	peroxisome	GO:0005777	Cellular Component	87%
Blast2go	nucleolus	GO:0005730	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Crotonase, core	IPR001753	-	-
Sma3	CD36 antigen	IPR002159	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, C-terminal	IPR006108	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, NAD binding	IPR006176	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, conserved site	IPR006180	-	-
Sma3	TIP49, C-terminal	IPR010339	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Enoyl-CoA hydratase/isomerase, conserved site	IPR018376	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV15

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 399 aas, your sequence is shorter than subject: 146 - 726

Fln protein: CLGVIPGFGGTQRLPRLVGLSKALEMILLSKPIKSEEASELGLVDAVVPPVELLNTARRWALDIAEFRRPWIRSLYRTDKLEPLGEAREILKFARIQAQKRAANLKHPLVCLDVIEEGIVSGPMAGLLKNWKVGMWSRFGFTNTF*

Protein Length: 147

Fln nts: AATGTCTTGGAGTTATCCCTGGTTTTGGTGGTACACAGCGGCTTCCACGCCTAGTGGGCCTTTCAAAGGCACTTGAAATGATACTTTTGTCGAAACCGATCAAATCTGAAGAGGCTAGTGAGTTGGGGCTTGTGGATGCTGTAGTCCCACCTGTGGAATTGCTAAACACAGCTCGTCGCTGGGCATTGGACATTGCAGAGTTTCGAAGGCCTTGGATAAGAAGCCTTTACCGGACCGACAAGTTAGAACCTTTGGGAGAGGCACGTGAAATCCTAAAATTTGCACGAATTCAAGCACAAAAGAGAGCTGCTAATCTCAAACATCCACTTGTTTGCCTCGATGTCATTGAGGAGGGAATTGTATCTGGACCAATGGCCGGCTTGCTAAAGAATTGGAAAGTTGGAATGTGGTCTAGGTTTGGCTTCACTAATACCTTCTGAGTTGAGGAAAGAAATTTTGTTTACTGCCCAAAATTATGATTAAAACTTAGGATTGACTGGCTCTAAGCAAGGATTTTTTATATTGGTATTCGACAAAGAAGATTACAAACAGGTCTAAAA

Fln Alignment:

AllPineV4_c92713___LGVIPGFGGTQRLPRLVGLSKALEMILLSKPIKSEEASELGLVDAVVPPVELLNTARRWALDIAEFRRPWIRSLYRTDKLEPLGEAREILKFARIQAQKRAANLKHPLVCLDVIEEGIVSGPMAGLLK
A9NV15_______________LGVIPGFGGTQRLPRLVGLSKALEMILLSKPIKSEEASELGLVDAVVPPLELLNSARRWALDIAEFRRPWIRSLYRTDKLEPLGEAREILKFARIQAQKRAANLKHPLVCLDVIEEGIVSGPMAGLVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain