SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene67556

Length: 355 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene67556
CGTCGTGACCTTGGCTGTCACTCAAAGGGCACCTCGGGCTCTCTTTATTCTTTTATTGACGTTGCTAGTTGTTGTGCTGGTTCAGACCAAGACTGGAATGAAGCTTCCCTCGTGGGTCAATCAGCCCCAGGACTTCAGGGATCATGGATTTTTTGAAGCAGAAGAGCAGAGTTGTTCAGGTTTTGTTAGGATGAATGGCAGAAGGAAGACGATTGTATCCATTGAAGATTTTGGAGGTGTGGGTGATGGGAAGACTATGAATACCAGAGCCTTTCAGAAGGCCATTGGTTATCTGAAATTATTTGCAGACAAGGGTGGGGCACAGCTTAATGTTCTCTCAGGGAAGTGGGTCACA

Ace file of the UniGene sp_v2.0_unigene67556

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gb\|AAM14020.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91751.1\| unknown protein [Arabidopsis thaliana] gb\|AED95784.1\| glycoside hydrolase fami	-	-	2.0e-11	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	probable polygalacturonase-like	-	-	3.3773e-16	71%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg: Distance to subject end: 380 aas, your sequence is shorter than subject: 86 - 472

Fln protein: MKLPSWVNQPQDFRDHGFFEAEEQSCSGFVRMNGRRKTIVSIEDFGGVGDGKTMNTRAFQKAIGYLKLFADKGGAQLNVLSGKWVT

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGGCACCTCGGGCTCTCTTTATTCTTTTATTGACGTTGCTAGTTGTTGTGCTGGTTCAGACCAAGACTGGA_-_ATGAAGCTTCCCTCGTGGGTCAATCAGCCCCAGGACTTCAGGGATCATGGATTTTTTGAAGCAGAAGAGCAGAGTTGTTCAGGTTTTGTTAGGATGAATGGCAGAAGGAAGACGATTGTATCCATTGAAGATTTTGGAGGTGTGGGTGATGGGAAGACTATGAATACCAGAGCCTTTCAGAAGGCCATTGGTTATCTGAAATTATTTGCAGACAAGGGTGGGGCACAGCTTAATGTTCTCTCAGGGAAGTGGGTCACA

Fln Alignment:

AllPineV4_c92641___RKTIVSIEDFGGVGDGKTMNTRAFQKAIGYLKLFADKGGAQLNVLSGKWVT
B8LQW0_______________RAQSVSIAEFGGVGDGTTVNTEAFRKAIEHLSEFSETGGGQLYIPPGRWLT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
85	33		66		0.997464
87		66		33	0.997464
88		66	33		0.997464
89	66			33	0.997464
127		66		33	0.997476
128		66	33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain