SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene67383

Length: 313 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene67383
CGTCGTGACCTTGGCTGTCACTCATATTAATTAATCAAGGATTGGCAACGCTTGCGTTCTTTGGGGTGGGTGTAAACCTGGTTCTATTCTTGACGAGAGTGCTTCATCAGCGTCGTGCCTTGGCTGTCACTAATGTGAGCAAGTGGACTGGAACTGTTTATATATTTTCTCTGCTTGGGGCATTTGTTAGTGATTCATACCTGGGACGCTACCGGACATGCACTCTGTTTCTCATCATTTTTGTAGTGGGTTTGGTGCTTTTGGCATTATCATCTCTATCTGTATTTTAGTGAAGCCTACTAACTGTGGAGAC

Ace file of the UniGene sp_v2.0_unigene67383

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nitrate transporter 1.8 [Arabidopsis thaliana] sp\|Q8GXN2.2\|PTR47_ARATH RecName: Full=Nitrate transporter 1.8 gb\|AEE84489.1\| nitrate transporter 1.8 [Arabidopsis thaliana]	-	-	1.0e-24	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	proton-dependent oligopeptide transport family protein	-	-	8.56549e-29	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	8.56549e-29	88%
Blast2go	nitrate assimilation	GO:0042128	Biological Process	8.56549e-29	88%
Blast2go	nitrate transport	GO:0015706	Biological Process	8.56549e-29	88%
Blast2go	response to nitrate	GO:0010167	Biological Process	8.56549e-29	88%
Blast2go	nitrate transmembrane transporter activity	GO:0015112	Molecular Function	8.56549e-29	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	8.56549e-29	88%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWU3

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 451 aas, your sequence is shorter than subject: 96 - 604

Fln protein: S*PWLSLILINQGLATLAFFGVGVNLVLFLTRVLHQRRALAVTNVSKWTGTVYIFSLLGAFVSDSYLGRYRTCTLFLIIFVVGLVLLALSSLSVF*

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTAATTAATCAAGGATTGGCAACGCTTGCGTTCTTTGGGGTGGGTGTAAACCTGGTTCTATTCTTGACGAGAGTGCTTCATCAGCGTCGTGCCTTGGCTGTCACTAATGTGAGCAAGTGGACTGGAACTGTTTATATATTTTCTCTGCTTGGGGCATTTGTTAGTGATTCATACCTGGGACGCTACCGGACATGCACTCTGTTTCTCATCATTTTTGTAGTGGGTTTGGTGCTTTTGGCATTATCATCTCTATCTGTATTTTAGTGAAGCCTACTAACTGTGGAGAC

Fln Alignment:

AllPineV4_c92198___SLILINQGLAT-LAFFGVGVNLVLFLTRVLHQRRALAVTNVSKWTGTVYIFSLLGAFVSDSYLGRYRT
A9NWU3_______________SLLIIGIEIAERLAYYGIASNLVTYLTNIMHQTTVTAVKNVNVWAGTASMLPLFGAFVADSYLGRYRT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain