SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene67334

Length: 421 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene67334
CGTCGTGACCTTGGCTGTCAAAATGAAGTTAGTTGGTGAGCCACTTGAGAAACTATTTCGATGGGGTCACTCAACTTGTGTTATGGACTTTACAGGTTCAAAATCATTGTTGCTTTTTGGTGGTTATGGAGGTTTGGGAACACATTCACGACAAAATGACACACTGATGTTGGACTTTGAAACTGGTAGTTTGAAGATTCTAAATGCAAGCAATTCACCAACTCCTAGAATGGGTCATACTGCTTCAATGGTGGGACAGTGTTTGTTTATCATTGGCGGCAGGGAAGACCCGACAAGAATCTTGAATGATGTATGGTTTCTTAACATGGATGAATTCAATGGTATTTGCTTGAATTCAATGGTGAAATATTCCCTTCAAGGCATCGACATGCTGCTGTAGTGGTGGGTTCTTGTATATATG

Ace file of the UniGene sp_v2.0_unigene67334

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Signal transducer, putative n=1 Tax=Ricinus communis RepID=B9RXL2_RICCO	-	-	2.0e-29	52%
FL-Next	sp=tRNA wybutosine-synthesizing protein 2/3/4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Blast2go	trna wybutosine-synthesizing protein 2 3 4-like	-	-	3.30606e-29	70%

Source	InterPros	Term	Type	Identity
Sma3	tRNA transferase Trm5/Tyw2	IPR003402	-	-
Sma3	tRNA wybutosine-synthesizing protein	IPR003827	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8W4K1

Fln msg: Separated hits, possible frame ERROR between 328 and 337, Distance to subject end: 606 aas, your sequence is shorter than subject: 140 - 995

Fln protein: VVTLAVKMKLVGEPLEKLFRWGHSTCVMDFTGSKSLLLFGGYGGLGTHSRQNDTLMLDFETGSLKILNASNSPTPRMGHTASMVGQCLFIIGGREDPTRILNDVWFLNxxxxQWYLLEFNGEIFPSRHRHAAVVVGSCIY

Protein Length: 141

Fln nts: CGTCGTGACCTTGGCTGTCAAAATGAAGTTAGTTGGTGAGCCACTTGAGAAACTATTTCGATGGGGTCACTCAACTTGTGTTATGGACTTTACAGGTTCAAAATCATTGTTGCTTTTTGGTGGTTATGGAGGTTTGGGAACACATTCACGACAAAATGACACACTGATGTTGGACTTTGAAACTGGTAGTTTGAAGATTCTAAATGCAAGCAATTCACCAACTCCTAGAATGGGTCATACTGCTTCAATGGTGGGACAGTGTTTGTTTATCATTGGCGGCAGGGAAGACCCGACAAGAATCTTGAATGATGTATGGTTTCTTAACATxxxxxxxxxTCAATGGTATTTGCTTGAATTCAATGGTGAAATATTCCCTTCAAGGCATCGACATGCTGCTGTAGTGGTGGGTTCTTGTATATATG

Fln Alignment:

AllPineV4_rep_c92089___KMKLVGEPLEKLFRWGHSTCVMDFTGSKSXXXXXXXXXXXTHSRQNDTLMLDFETGSLKILNASNSPTPRMGHTASMVGQCLFIIGGREDPTRILNDVWFLNMxxxQWYLLEFNGEIFPSRHRHAAVVVGSCIY
Q8W4K1_______________KLSIVGEPVEKLHLWGHSACTIDESDRKEVIVFGGFGGFGRHARRNESLLLNPSCGTLKLIAVNESPSARLGHTASMVGDFMFVIGGRADPLNILNDVWRLDIxxxEWSSQRCVGSEFPPRHRHAAASVGTKVY

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
197			66	33	0.997458
198	66		33		0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain