SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65837

Length: 332 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene65837
CGTCGTGACCTTGGCTGTCACTCAATCAATTGCAGGCCTTTCTGACTCTTAATAATAAGTCCTGCTGATCTGATTCTCTCTCTCAATGGCTGGTGCAATAAGAAAATGCTTTGCATGGGCATACTGTATTTTTATGTTCTGCATTGCTTACAAATCTCAGATGTGCCGTTCACAAACTGGTTCAGCAGCTTCTTTTATTTTTGGGGACTCGCTGGTGGATGCGGGAAACAATAACTATATATTCTCTCTATCGAAAGCTGATAATGTCCCTAATGGAATAGATTTTGCTGCTTCTGGTGGGAGGCCTAATGGCCGATATACTAATGGCAGAA

Ace file of the UniGene sp_v2.0_unigene65837

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	proline-rich, APG like protein [Arabidopsis thaliana] emb\|CAB78665.1\| proline-rich, APG like protein [Arabidopsis thaliana]	-	-	4.0e-13	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	gdsl esterase lipase at2g23540-like	-	-	1.36825e-20	79%

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQT0

Fln msg: Distance to subject end: 291 aas, your sequence is shorter than subject: 82 - 369

Fln protein: MAGAIRKCFAWAYCIFMFCIAYKSQMCRSQTGSAASFIFGDSLVDAGNNNYIFSLSKADNVPNGIDFAASGGRPNGRYTNGR

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCAATTGCAGGCCTTTCTGACTCTTAATAATAAGTCCTGCTGATCTGATTCTCTCTCTCA_-_ATGGCTGGTGCAATAAGAAAATGCTTTGCATGGGCATACTGTATTTTTATGTTCTGCATTGCTTACAAATCTCAGATGTGCCGTTCACAAACTGGTTCAGCAGCTTCTTTTATTTTTGGGGACTCGCTGGTGGATGCGGGAAACAATAACTATATATTCTCTCTATCGAAAGCTGATAATGTCCCTAATGGAATAGATTTTGCTGCTTCTGGTGGGAGGCCTAATGGCCGATATACTAATGGCAGAA

Fln Alignment:

AllPineV4_rep_c88336___AYCIFMFCIAYKSQMCRSQTGSAASFIFGDSLVDAGNNNYIFSLSKADNVPNGIDFAASGGRPNGRYTNGR
B8LQT0_______________SFKIILLLVAYGFKFSEAAGNLAASFVFGDSLVDAGNNNYIFTLSKANIAPNGCDFKPSAGQPSGRYTNGR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
52	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain