SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65779

Length: 430 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene65779
GATGACTCAGCGGGCGTAGTCACTGCATTCTATCTATCCTCACAGACTTCTCAGCATGACGAGATAGATTTTGAATTCCTGGGCAACAGGACAGGGCAGCCTTACATTCTCCAAACGAATATTTTCACAGGAGGAAAAGGAGACAGAGAGCAGCGCATATACCTCTGGTTCGATCCCACCAAAGATTTCCATTCCTACGCTGTGCTCTGGAACATGAAAATGATTGCGATTTTTGTAGATGAAATTCCAATCAGAGTTTTCAAAAATAGCCAGGACTTGGGTGTGGGTTACCCCTTCAATCAGCCGATGAAGGTGTACTCAAGCCTCTGGAATGCTGACGATTGGGCTACAAGAGGGGGACTGGAGAAGACAGATTGGAGCAAGGCCCCCTTCGTTTCATCATACAAGGGATTCTACGTCGATAGGTTGT

Ace file of the UniGene sp_v2.0_unigene65779

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen major allergen No.121 isoform 2 n=1 Tax=Cryptomeria japonica RepID=Q588B9_CRYJA	-	-	84%
FL-Next	tr=Pollen major allergen No.121 isoform 2; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	84%
Blast2go	xyloglucan endotransglucosylase hydrolase protein a	-	-	94%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q588B9

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 143 - 290

Fln protein: DDSAGVVTAFYLSSQTSQHDEIDFEFLGNRTGQPYILQTNIFTGGKGDREQRIYLWFDPTKDFHSYAVLWNMKMIAIFVDEIPIRVFKNSQDLGVGYPFNQPMKVYSSLWNADDWATRGGLEKTDWSKAPFVSSYKGFYVDRL

Protein Length: 144

Fln nts: GATGACTCAGCGGGCGTAGTCACTGCATTCTATCTATCCTCACAGACTTCTCAGCATGACGAGATAGATTTTGAATTCCTGGGCAACAGGACAGGGCAGCCTTACATTCTCCAAACGAATATTTTCACAGGAGGAAAAGGAGACAGAGAGCAGCGCATATACCTCTGGTTCGATCCCACCAAAGATTTCCATTCCTACGCTGTGCTCTGGAACATGAAAATGATTGCGATTTTTGTAGATGAAATTCCAATCAGAGTTTTCAAAAATAGCCAGGACTTGGGTGTGGGTTACCCCTTCAATCAGCCGATGAAGGTGTACTCAAGCCTCTGGAATGCTGACGATTGGGCTACAAGAGGGGGACTGGAGAAGACAGATTGGAGCAAGGCCCCCTTCGTTTCATCATACAAGGGATTCTACGTCGATAGGTTGT

Fln Alignment:

AllPineV4_rep_c88157___DSAGVVTAFYLSSQTSQHDEIDFEFLGNRTGQPYILQTNIFTGGKGDREQRIYLWFDPTKDFHSYAVLWNMKMIAIFVDEIPIRVFKNSQDLGVGYPFNQPMKVYSSLWNADDWATRGGLEKTDWSKAPFVSSYKGFYVD
Q588B9_______________DSAGTVTAFYLSSQNSEHDEIDFEFLGNRSGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNMRQIVFFVDDVPIRVFKNSKDLGVRYPFNQPMKIYSSLWNADDWATRGGIEKTDWSKAPFVAAYKGFHID

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain