SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65629

Length: 382 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene65629
CGCCACCAGGGGATCCACTGCTATTACCATCTCAAACAGTTATTTCACTCAACACAATGAGGTGATGTTGTTGGGTCACCATGATAACTACACTGGCGATGTCAGGATGCAAGTGACGGTTGCATTCAACCATTTTGGCGAAGGTCTTGTGCAGCGAATGCCCAGGTGCAGGCACGGATACTTCCATGTGGTGAACAATGACTACAGTGAATGGGGAATGTATGCAATCGGTGGGAGTGCAAACCCCACAATCAACAGCCAAGGAAATAGATTCATGGCATCTGCAAATCCTTCTGCGAAAGAGGTAACAAAGCGGATAAACCAAAACAGTGACGAATGGAAGAGCTGGAACTGGAGATCGGAAGGAGATATGATGCTGAAC

Ace file of the UniGene sp_v2.0_unigene65629

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pectate lyase 2 [Musa acuminata AAA Group]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	pectate lyase	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF11	IPR001434	-	-
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectate lyase, N-terminal	IPR007524	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	AmbAllergen	IPR018082	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQH9

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 127 - 429

Fln protein: ATRGSTAITISNSYFTQHNEVMLLGHHDNYTGDVRMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYSEWGMYAIGGSANPTINSQGNRFMASANPSAKEVTKRINQNSDEWKSWNWRSEGDMMLN

Protein Length: 128

Fln nts: CGCCACCAGGGGATCCACTGCTATTACCATCTCAAACAGTTATTTCACTCAACACAATGAGGTGATGTTGTTGGGTCACCATGATAACTACACTGGCGATGTCAGGATGCAAGTGACGGTTGCATTCAACCATTTTGGCGAAGGTCTTGTGCAGCGAATGCCCAGGTGCAGGCACGGATACTTCCATGTGGTGAACAATGACTACAGTGAATGGGGAATGTATGCAATCGGTGGGAGTGCAAACCCCACAATCAACAGCCAAGGAAATAGATTCATGGCATCTGCAAATCCTTCTGCGAAAGAGGTAACAAAGCGGATAAACCAAAACAGTGACGAATGGAAGAGCTGGAACTGGAGATCGGAAGGAGATATGATGCTGAAC

Fln Alignment:

AllPineV4_rep_c87736___ATRGSTAITISNSYFTQHNEVMLLGHHDNYTGDVRMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYSEWGMYAIGGSANPTINSQGNRFMASANPSAKEVTKRINQNSDEWKSWNWRSEGDMMLN
B8LQH9_______________AIRGSTAITISNSYFTHHNEVMLLGHHDNYTADVHMQVTIAFNHFGEDLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPENRWAKEVTKRVNENKDEWKKWNWRSEGDMMLN

SNPs (tot: 3)

Position	A %	G %	T %	Probability
134	33		66	0.997476
135	33		66	0.997476
138		66	33	0.997461

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain