SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65348

Length: 635 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene65348

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Ferredoxin--NADP reductase, chloroplastic; Short=FNR; Flags: Precursor gb\|AAA33029.1\| ferredoxin-NADP+ reductase precursor [Mesembryanthemum crystallinum] prf\|\|1604475A ferredoxin NADP reductase	-	-	2.0e-29	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	ferredoxin-nadp+ reductase	-	-	9.03652e-37	61%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADPH dehydrogenase.	EC:1.6.99.1	-	9.03652e-37	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	photosynthetic electron transport chain	GO:0009767	Biological Process	9.03652e-37	61%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	9.03652e-37	61%
Blast2go	poly(U) RNA binding	GO:0008266	Molecular Function	9.03652e-37	61%
Blast2go	NADPH dehydrogenase activity	GO:0003959	Molecular Function	9.03652e-37	61%
Blast2go	electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	GO:0045157	Molecular Function	9.03652e-37	61%
Blast2go	protein binding	GO:0005515	Molecular Function	9.03652e-37	61%
Blast2go	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	GO:0045156	Molecular Function	9.03652e-37	61%
Blast2go	thylakoid lumen	GO:0031977	Cellular Component	9.03652e-37	61%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	9.03652e-37	61%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	9.03652e-37	61%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	9.03652e-37	61%
Blast2go	apoplast	GO:0048046	Cellular Component	9.03652e-37	61%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M41	IPR000642	-	-
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Ferredoxin-NADP+ reductase	IPR012146	-	-
Sma3	Ferredoxin Reductase	IPR015701	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-

Full-Lengther Next Prediction

SSRs (tot: 1)

Start position	End position	Sequence	Length
575	589	CTCTT CTCTT CTCTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain