SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65179

Length: 442 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene65179
ATGCATCGTTCACATCAGGCTGAGGATATTAGAAAAGCAGTGTCAACTTCACACTGTTCTCAGCCAAATACAATTGAGTATGAAATGGCTATGGAATGGCGGCTTCTACAGAAAAATCAGAATGCTGGTGGAAGGAATTATACAAGCAAGAAAGTTTGGAGCTTGACAAAGTGAAGCGCAACCATCTTATTTTGACTGCAAACAAGAAACTGGATAAATAGAGCTTTTGCAGATGGAAGAATGGAGAATTTTTGTATGGTTACATGTGGATGATGCTACCAGGTTACATTATAAAGAAAGTGCTACATGAACTAGTTAGCACGTCAGCAAGAATGTTGCAACGATGTCAAAGACTTTGCAGCCAACTCTAGATATGAAGGCACATTAAATTCAGGTCTCGACCAGTTGATGATCTTAACAGCTTTGGTGTATAATAATTTAT

Ace file of the UniGene sp_v2.0_unigene65179

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	uncharacterized protein loc100275800	-	-	6.12122e-15	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE95

Fln msg: Overlapping hits, possible frame ERROR between 171 and 111, your sequence is shorter than subject: 74 - 328

Fln protein: MHRSHQAEDIRKAVSTSHCSQPNTIEYEMAMEWRLLxxxxxxxxxxxxxxxxxxxxxxKRNHLILTANKKLDK*

Protein Length: 75

Fln nts: ATGCATCGTTCACATCAGGCTGAGGATATTAGAAAAGCAGTGTCAACTTCACACTGTTCTCAGCCAAATACAATTGAGTATGAAATGGCTATGGAATGGCGGCTTCTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGCGCAACCATCTTATTTTGACTGCAAACAAGAAACTGGATAAATAGAGCTTTTGCAGATGGAAGAATGGAGAATTTTTGTATGGTTACATGTGGATGATGCTACCAGGTTACATTATAAAGAAAGTGCTACATGAACTAGTTAGCACGTCAGCAAGAATGTTGCAACGATGTCAAAGACTTTGCAGCCAACTCTAGATATGAAGGCACATTAAATTCAGGTCTCGACCAGTTGATGATCTTAACAGCTTTGGTGTATAATAATTTAT

Fln Alignment:

AllPineV4_rep_c86314___MHRSHQAEDIRKAVSTSHCSQPNTIEYEMAMEWRLLQxxxxxxxxxxxxxxxxxxxxVKRNHLILTANKKLDK
D5AE95_______________LHRSHQMEDIRKAVSTSHCSQPNTIEYEMAMDWRLLQxxxxxxxxxxxxxxxxxxxxVKRNHLILTAKKKLDK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
305	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain