SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65120

Length: 479 nt

Origin of reads: Inia v1

UniGene Fasta

>sp_v2.0_unigene65120
ATTTTTGGAGATTACAATCCAGGTAACTGTGTCCCTTCAATTTTCAATTTTCACATTTTTTTCCAGGCATACTGTTTGAAATTTTATGAGGCCAATTCCAAAGGTTAATTTCCAATTATAGCAGGTTGGAAACTAAGATCATTTGCTGCAAAAGTGCTAACCTTCCAAAACATTGCAGGTGGGCGGTTGCCTATGACATGGTACCCTCAAGCTTTCATAAAAATTCCCATGAACATCATGGACATGCGTCCCAATTCTTCCAGAGGATACCCAGGCCGAACATACCGATTCTATACAGGGGAAACTGTATTTGAGTTTGGTTATGGATTAAGTTATTCAACCTACTCTTCTATTTTTCCTACATCAACACCGGATCACATTATTCTGCCAGCTCACAATCATGTCCAACTTCATTCACTGCACCAGGTTTCACCAGAGAGGGAAAATGCATCTAACCTCATCTACGTTGATGCTTATAC

Ace file of the UniGene sp_v2.0_unigene65120

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	xylan 1,4-beta-xylosidase [Populus tremula x Populus alba]	-	-	4.0e-20	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	xylan 1 4-beta-xylosidase	-	-	2.14086e-25	74%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 99 aas, your sequence is shorter than subject: 159 - 304

Fln protein: IFGDYNPGNCVPSIFNFHIFFQAYCLKFYEANSKG*FPIIAGWKLRSFAAKVLTFQNIAGGRLPMTWYPQAFIKIPMNIMDMRPNSSRGYPGRTYRFYTGETVFEFGYGLSYSTYSSIFPTSTPDHIILPAHNHVQLHSLHQVSPERENASNLIYVDAY

Protein Length: 160

Fln nts: ATTTTTGGAGATTACAATCCAGGTAACTGTGTCCCTTCAATTTTCAATTTTCACATTTTTTTCCAGGCATACTGTTTGAAATTTTATGAGGCCAATTCCAAAGGTTAATTTCCAATTATAGCAGGTTGGAAACTAAGATCATTTGCTGCAAAAGTGCTAACCTTCCAAAACATTGCAGGTGGGCGGTTGCCTATGACATGGTACCCTCAAGCTTTCATAAAAATTCCCATGAACATCATGGACATGCGTCCCAATTCTTCCAGAGGATACCCAGGCCGAACATACCGATTCTATACAGGGGAAACTGTATTTGAGTTTGGTTATGGATTAAGTTATTCAACCTACTCTTCTATTTTTCCTACATCAACACCGGATCACATTATTCTGCCAGCTCACAATCATGTCCAACTTCATTCACTGCACCAGGTTTCACCAGAGAGGGAAAATGCATCTAACCTCATCTACGTTGATGCTTATAC

Fln Alignment:

AllPineV4_rep_c86126___GGRLPMTWYPQAFIKIPMNIMDMRPNSSRGYPGRTYRFYTGETVFEFGYGLSYSTYSSIFPTSTPDHIIL
D5ABI5_______________GGRLPMTWYPQDFVKIPMTDMNMRPNHDTGYPGRTYRFYTGKKVFEFGQGLSYSAYSYNFSSTTIQKIDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain