SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene64913

Length: 290 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene64913
CTTGAGAGAGCTGTATGAGACTTATGGGACAGTCATGGCTGGACTCAGGGCAACTGGCTACGAAGTTGACCATCACGATTATCACAGTTTTCTTAACGAAAGCGTGCCATATGAGATTCTTAAACCAGATCTTGTGCTGAAGAACTTGTTATTAAGCATGCCTCAGAGGAAAATTATATTTACCAACAGTGACGAAATTCATGCTGCAAAGGTCCTTAACAAGATGGGGTTGGAAGATTGCTTTGAAGCATAATATGCTTTGAGACGCTTAATCCTCCTTCAAAAATAAC

Ace file of the UniGene sp_v2.0_unigene64913 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	haloacid dehalogenase-like hydrolase domain-containing protein	-	-	1.96529e-29	83%

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase/epoxide hydrolase	IPR005833	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	Pyrimidine 5-nucleotidase	IPR010237	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NL51

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 120 aas, your sequence is shorter than subject: 84 - 276

Fln protein: LRELYETYGTVMAGLRATGYEVDHHDYHSFLNESVPYEILKPDLVLKNLLLSMPQRKIIFTNSDEIHAAKVLNKMGLEDCFEA*

Protein Length: 85

Fln nts: CTTGAGAGAGCTGTATGAGACTTATGGGACAGTCATGGCTGGACTCAGGGCAACTGGCTACGAAGTTGACCATCACGATTATCACAGTTTTCTTAACGAAAGCGTGCCATATGAGATTCTTAAACCAGATCTTGTGCTGAAGAACTTGTTATTAAGCATGCCTCAGAGGAAAATTATATTTACCAACAGTGACGAAATTCATGCTGCAAAGGTCCTTAACAAGATGGGGTTGGAAGATTGCTTTGAAGCATAATATGCTTTGAGACGCTTAATCCTCCTTCAAAAATAAC

Fln Alignment:

AllPineV4_rep_c85368___RELYETYGTVMAGLRATGYEVDHHDYHSFLNESVPYEIXXXXXXXXXXXLSMPQRKIIFTNSDEIHAAKVLNKMGLEDCFE
A9NL51_______________RELYKTYGTTMAGLRAIGYEFDYDDYHSFVHGRLPYENLKPDPVLKNLLLSMPQRKIIFTNSDKVHAAKVLNRLGLEDCFE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain