SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene64791

Length: 468 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene64791
CGTCGTGACCTTGGCGTCATCAATCAGTTAGAAGACGGAGGAAGCGGAGGAGGACAACGTACTTATACTATTATTGTTGTCAAAAGTCTTTCCAACTTATGCCAAAGATCCATTCTTGCATTCACTGAAGTGAAAAGATCCAGGCTTGGGCAGACTGCTTATTCCTTTTTTTGTTCATGTGACTCCCCGGCGGGTGGGGCGTCGTTTGGTTCTTATGTATGGCAACCAATTTTGAGTTTCAAGAATGGTGGAACAAGGAGAAGGAGATCCACAGGGGCACTTCCGTGGTAGTGAAAATGGAGAATCCAAATTGGTCCATGGTGGAATTGCAAAGCCCCGACGACGATTTCCAGCACTCAGATAAGCAGGGCCGGGGCAAAAATGCCAGGCAACTTACCTGGGTTTGGCTGCTGAAAGCCCATCGCGCCGCGGGCTGTGTCGCCTGGCTCGCGCAGGGGCTATGGAGCC

Ace file of the UniGene sp_v2.0_unigene64791 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cellulose synthase-like C1-1, glycosyltransferase family 2 protein n=2 Tax=Selaginella moellendorffii RepID=D8RV47_SELML	-	-	2.0e-25	66%
FL-Next	sp=Probable xyloglucan glycosyltransferase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	56%
Blast2go	cellulose synthase-like glycosyltransferase family 2	-	-	6.0447e-29	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	6.0447e-29	73%

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 2	IPR001173	-	-
Sma3	SecY protein	IPR002208	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9SB75

Fln msg: Distance to subject end: 612 aas, your sequence is shorter than subject: 83 - 692

Fln protein: MATNFEFQEWWNKEKEIHRGTSVVVKMENPNWSMVELQSPDDDFQHSDKQGRGKNARQLTWVWLLKAHRAAGCVAWLAQGLWS

Protein Length: 84

Fln nts: CGTCGTGACCTTGGCGTCATCAATCAGTTAGAAGACGGAGGAAGCGGAGGAGGACAACGTACTTATACTATTATTGTTGTCAAAAGTCTTTCCAACTTATGCCAAAGATCCATTCTTGCATTCACTGAAGTGAAAAGATCCAGGCTTGGGCAGACTGCTTATTCCTTTTTTTGTTCATGTGACTCCCCGGCGGGTGGGGCGTCGTTTGGTTCTTATGT_-_ATGGCAACCAATTTTGAGTTTCAAGAATGGTGGAACAAGGAGAAGGAGATCCACAGGGGCACTTCCGTGGTAGTGAAAATGGAGAATCCAAATTGGTCCATGGTGGAATTGCAAAGCCCCGACGACGATTTCCAGCACTCAGATAAGCAGGGCCGGGGCAAAAATGCCAGGCAACTTACCTGGGTTTGGCTGCTGAAAGCCCATCGCGCCGCGGGCTGTGTCGCCTGGCTCGCGCAGGGGCTATGGAGCC

Fln Alignment:

AllPineV4_rep_c84944___MATNFEFQEWWNKEKEIHRGTSVVVKMENPNWSMVELQSPDDDFQHSDKQGRGKNARQLTWVWLLKAHRAAGCVAWLAQGLWS
Q9SB75_______________MAPRLDFSDWW--AKDTRKGTPVVVKMENPNYSVVEIDGPDSAFRPVEKS-RGKNAKQVTWVLLLKAHRAVGCLTWLATVFWS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
135	16	83			0.994512
136			16	83	0.994512
137	16			83	0.994512
138	16			83	0.994512
140	16	66	16		0.988813
141	83	16			0.994512
142	83		16		0.994512
143	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain