SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene64234

Length: 400 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene64234
GCCTGAGAAAGAATCCCCGTCGGATCTTGGTTGTGACCTGTTTCCCACTCCTTTTTCATTCTTCGTGGGCAGCACATTCGAAGGGGCACCGGCAGAGCAGCAAGCGCTCTTGGAGCTGGAGGATACCGCCGCCCGGCTGAAGAGGGAGAAGGAGACCCTCAGGAACACTCTCAATTATTTGACAGCTGCAGCTGCAGTGAAAGATGTCTTTCCATCTTCGGACTGATAGTTAACCTAGAGGTTCATTATTCTCATTCAAGCCTTCTTTTTACACTGTAAATGGATGCCATTACGATGAGCAATTTTTAGATGTTCTAAATAACAGAGATTAAATGAGAAATCCCTATTAATATTTCTAAGAGAAGCTTTCAAAAATTTCTGTGTTATCACCATAACTAAG

Ace file of the UniGene sp_v2.0_unigene64234

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent protease La domain-containing protein [Arabidopsis thaliana] gb\|AAG12554.1\|AC007797_14 Unknown Protein [Arabidopsis thaliana] gb\|AAM91594.1\| unknown protein [Arabidopsis thaliana] gb\|AAN15448.1\| unknown protein [Arabidopsis thaliana] gb\|AEE2	-	-	4.0e-26	86%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	85%
Blast2go	atp-dependent protease la domain-containing protein	-	-	1.51801e-35	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	1.51801e-35	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9RQJ9

Fln msg: your sequence is shorter than subject: 75 - 181

Fln protein: PEKESPSDLGCDLFPTPFSFFVGSTFEGAPAEQQALLELEDTAARLKREKETLRNTLNYLTAAAAVKDVFPSSD*

Protein Length: 76

Fln nts: GCCTGAGAAAGAATCCCCGTCGGATCTTGGTTGTGACCTGTTTCCCACTCCTTTTTCATTCTTCGTGGGCAGCACATTCGAAGGGGCACCGGCAGAGCAGCAAGCGCTCTTGGAGCTGGAGGATACCGCCGCCCGGCTGAAGAGGGAGAAGGAGACCCTCAGGAACACTCTCAATTATTTGACAGCTGCAGCTGCAGTGAAAGATGTCTTTCCATCTTCGGACTGA___TAGTTAACCTAGAGGTTCATTATTCTCATTCAAGCCTTCTTTTTACACTGTAAATGGATGCCATTACGATGAGCAATTTTTAGATGTTCTAAATAACAGAGATTAAATGAGAAATCCCTATTAATATTTCTAAGAGAAGCTTTCAAAAATTTCTGTGTTATCACCATAACTAAG

Fln Alignment:

AllPineV4_rep_c82688___PEKESPSDLGCDLFPTPFSFFVGSTFEGAPAEQQALLELEDTAARLKREKETLRNTLNYLTAAAAVKDVFPSSD
A9RQJ9_______________PDKDVPEDLRKSLFPTPFSFWVGSTFEGAPAEQQALLELEDTAVRLKREKETLRNTLNYLTAASAVKDAFPSSD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
298	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain