SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63709

Length: 570 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene63709
CGTCGTGACCTTGGCTGTCACTCAGCTCTGTACAATGGAAGGCTAGTTAAGAAAATGATGTCGAATCCGCCCAAGGGTACCCCGAGAAGGCCCGGAGTTGGCATACCCACCTTCATTTTTGCTCTCTTCAATGAAAACCAGAAGCCTGGGCCTGTGACCGAGAGAAACTGGGGGCTTCTCTATCCCAATGCTTCTCACGTTTATCCCCTGAATTTTTGAGCTCTGTAATTAGGTTCCCATACTCTGCCATAATCTGTAATTAGGTTCCCATACTCTGCCATAATCTGTAATTAGGTTCCCATAGGCACTAATTTCCAGTTTCCATTCATTCATTTCGATTATTTTTTGAAATCTTTTGAGTAAATCGTGATTGAATTTGTACGCCAGATTCTGTGGCCTAGGCAGTGAAATTGTATATCAAATTCTGTGGCTCAAGATTGTTATGCTTGGCCAGCTTGTTTCAAATGTAATAATGGATATCACTAGTGAAACTCCTCAACTTCAATTGTCATGAACTACATTGAACTTCCATGAAACTGAATAAAATCACTGGTAAGCAGTGTCATTCGC

Ace file of the UniGene sp_v2.0_unigene63709

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana] dbj\|BAB01853.1\| beta-1,3-glucanase [Arabidopsis thaliana] gb\|ABE65959.1\| glycosyl hydrolase family 17 protein [Arabidopsis thaliana] gb\|AEE76811.1\| O-Glycosyl hydrolases family 17 protein [Ara	-	-	1.0e-16	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	at4g14080-like protein	-	-	8.67956e-23	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	8.67956e-23	79%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKM5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 121 aas, putative chimeric sequence, your sequence is shorter than subject: 73 - 494

Fln protein: RRDLGCHSALYNGRLVKKMMSNPPKGTPRRPGVGIPTFIFALFNENQKPGPVTERNWGLLYPNASHVYPLNF*

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTCTGTACAATGGAAGGCTAGTTAAGAAAATGATGTCGAATCCGCCCAAGGGTACCCCGAGAAGGCCCGGAGTTGGCATACCCACCTTCATTTTTGCTCTCTTCAATGAAAACCAGAAGCCTGGGCCTGTGACCGAGAGAAACTGGGGGCTTCTCTATCCCAATGCTTCTCACGTTTATCCCCTGAATTTTTGA___GCTCTGTAATTAGGTTCCCATACTCTGCCATAATCTGTAATTAGGTTCCCATACTCTGCCATAATCTGTAATTAGGTTCCCATAGGCACTAATTTCCAGTTTCCATTCATTCATTTCGATTATTTTTTGAAATCTTTTGAGTAAATCGTGATTGAATTTGTACGCCAGATTCTGTGGCCTAGGCAGTGAAATTGTATATCAAATTCTGTGGCTCAAGATTGTTATGCTTGGCCAGCTTGTTTCAAATGTAATAATGGATATCACTAGTGAAACTCCTCAACTTCAATTGTCATGAACTACATTGAACTTCCATGAAACTGAATAAAATCACTGGTAAGCAGTGTCATTCGC

Fln Alignment:

AllPineV4_rep_c79730___YNGRLVKKMMSNPPKGTPRRPGVGIPTFIFALFNENQKPGPVTERNWGLLYPNASHVYPL
B8LKM5_______________YNQQLVQKVLADPPRGTPRRPGAFIPTFIFSLFNEDQKPGPNTERNWGLFYPDGTPVYPI

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
89		25	75		0.996481
91		75		25	0.996483
93		75	25		0.996483
94			75	25	0.996481
98		25	75		0.996481
105	66		33		0.997452
110		66		33	0.997452
155		66	33		1.0
166			80	20	0.995493
167	60		20	20	0.99255
168		20	80		0.995493
169	60		20	20	0.99255
170		20	80		0.995493
171	66			33	1.0
172	60	20	20		0.99255
173	80			20	0.995493
175	20			80	0.995493
176		33	66		1.0
177	16		66	16	0.98887
178		20	80		0.995493
179	20		80		0.995493
188			33	66	1.0
189	66			33	1.0
190			33	66	1.0
191	33	66			1.0
194	66			33	1.0
195	62			37	1.0
196			37	62	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain