SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63554

Length: 1074 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene63554 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen major allergen No.121 isoform 2 n=1 Tax=Cryptomeria japonica RepID=Q588B9_CRYJA	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	xyloglucan endotransglycosylase	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2N8

Fln msg:

Fln protein: MLIKMVSKLLLVFLVAAMAAMAASPPKPVDVPFPKNYVPTWAADHIKYINGGNEVQLSLDKWTGTGFQSKGTYLFGHFSMQIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRSGQPYILQTNVFSGGKGNREQRIYLWFDPTKDYHAYSVLWNMHQIVFFVDDVPIRVFKNSRDLGVRYPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFVASYRGFHVDGCEASVAESTCATQGRRWWDQKAFDDLDGMQWRKLKGVRDSYTIYNYCADKVRSPAMPPECTRDRDI*

Protein Length: 296

Fln nts: ATGGGGAGGCTTTAGCATATCATTTGTTTGCAGAGATTTGTTGGGTAAGGCCA_-_ATGCTGATCAAGATGGTCTCCAAACTGTTGCTGGTGTTCTTGGTAGCTGCAATGGCTGCTATGGCTGCCTCACCTCCTAAGCCTGTGGACGTACCATTCCCAAAAAATTATGTACCCACTTGGGCTGCTGATCATATCAAGTACATCAATGGTGGAAATGAGGTTCAGCTTTCTCTAGACAAATGGACAGGTACTGGCTTCCAATCCAAGGGTACCTACTTGTTTGGACACTTTAGTATGCAGATAAAGATGGTTCCTGGTGACTCTGCAGGCACTGTGACTGCCTTTTATCTATCCTCCCAGAATGCTGAGCACGATGAAATAGATTTTGAGTTCCTGGGCAATAGGTCTGGACAGCCTTACATTCTCCAAACTAATGTTTTCAGTGGAGGAAAAGGAAACAGAGAGCAGAGGATATACCTCTGGTTTGACCCCACAAAAGATTACCATGCCTACTCTGTGCTCTGGAACATGCATCAGATCGTATTCTTTGTGGACGATGTCCCCATCAGAGTTTTCAAGAATAGCAGGGACTTAGGAGTGAGGTATCCATTTAACCAGCCCATGAAAATATACTCAAGCCTGTGGAATGCTGATGACTGGGCCACAAGGGGTGGGCTGGAGAAGACAGATTGGAGCAAAGCACCATTTGTTGCATCATACAGGGGATTCCACGTGGATGGGTGTGAAGCCTCTGTAGCTGAGTCGACTTGTGCTACTCAGGGTCGTCGGTGGTGGGATCAAAAGGCCTTCGATGACCTTGATGGAATGCAATGGAGAAAACTGAAGGGGGTTCGTGACAGTTACACCATCTATAACTACTGCGCTGACAAAGTGAGGTCTCCAGCAATGCCTCCAGAGTGTACCAGAGACCGTGACATTTAA___TAGTAGCCTCCTAGGGGCTCTTATTTATAGATATATTAATATATCTTCTGTAATCTATTCTTATTAGATATGCTTCGTTATTTATGTCATCGTTACTGTTTTGCAGTCACAAGATGACTTATCTCTGTAATGCTTG

Fln Alignment:

AllPineV4_rep_c78533___MLIKMVSKLLLVFLVXXXXXXXASPPKPVDVPFPKNYVPTWAADHIKYINGGNEVQLSLDKWTGTGFQSKGTYLFGHFSMQIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRSGQPYILQTNVFSGGKGNREQRIYLWFDPTKDYHAYSVLWNMHQIVFFVDDVPIRVFKNSRDLGVRYPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFVASYRGFHVDGCEASVAESTCATQGRRWWDQKAFDDLDGMQWRKLKGVRDSYTIYNYCADKVRSPAMPPECTRDRDI
A9P2N8_______________MLIKMVPKLLLVLLVAATAAMAVSPPKPVDVPFPKNYVPSWAADHIKYINGGNEIQLSLDKWTGTGFQSKGSYLFGHFSMQIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRSGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYAVLWNMHQIVFFVDDVPIRVFKNSRDLGVRYPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFVASYRGFHVDGCEASVSNSACPTLGRRWWDQKAFDDLDGMQWRKLKGVRDRYTIYNYCADRGRYPAMPPECTRDRDI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
332		14		85	0.993541
394		14		85	0.993533
581	28			71	1.0
788	66		33		1.0
884	50		50		1.0
985	66		33		0.997452
1003	66		33		0.997452
1024		25	75		0.996486

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain