SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63349

Length: 220 nt

UniGene Fasta

>sp_v2.0_unigene63349
TTGGTGGGTGTTGATCAGAGCCAGGCACGATGGGTTTATCGCAGTTTCCAGAGGCGTTGGAAGGAGGAGTAATACCATTTTTCCTCATTCATGCAGCCCTGTCTATGGCCATGGTGGGGGACATTCTCATCTCACTTCTCCGAAAATTGGGTTTCAAACTGACTGAACCAACAGAATTTGCAGAAACCCTATCGTTAAATGCATATGCAGAAGAAGCAGC

Ace file of the UniGene sp_v2.0_unigene63349

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	unknown [Picea sitchensis]	-	-	5.49629e-19	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0Y9

Fln msg: Distance to subject end: 111 aas, your sequence is shorter than subject: 63 - 176

Fln protein: MGLSQFPEALEGGVIPFFLIHAALSMAMVGDILISLLRKLGFKLTEPTEFAETLSLNAYAEEA

Protein Length: 64

Fln nts: TTGGTGGGTGTTGATCAGAGCCAGGCACG_-_ATGGGTTTATCGCAGTTTCCAGAGGCGTTGGAAGGAGGAGTAATACCATTTTTCCTCATTCATGCAGCCCTGTCTATGGCCATGGTGGGGGACATTCTCATCTCACTTCTCCGAAAATTGGGTTTCAAACTGACTGAACCAACAGAATTTGCAGAAACCCTATCGTTAAATGCATATGCAGAAGAAGCAGC

Fln Alignment:

AllPineV4_rep_c77834___MGLSQFPEALEGGVIPFFLIHAALSMAMVGDILISLLRKLGFKL-TEPTEFAETLSLNAYAEE
A9P0Y9_______________MGLSQFPEAWEGGVILFIIIHAALFMAMVRGILICILRKVGFKVYTEPPELAETLWSYAYAEE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain