SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63347

Length: 403 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene63347
AGGCGCAAGCCGAACTGCGACGGTGGAATCAATCGGTCGGGCATGTCGAGACTGGGGCTCCTTCTTGGTAATTATAAACATTTGCAGTATCTCATATATCATTTTTCTGACAGTTCGATCGCTGTTCACATCAATTCATGTGATGTTGAGAATTACAGGTGAAGAATCATGGGGTTTTAGAATCCACCATGGAAAAGGAGATGCGAGTGGGGCGAGAATTTTTCCACTTGCCCACTGAGGAGAAGATGCGCTACTTCTCGACGGACCCCAAATCTCACATGCGCTATTCCACCAGCTTCAATGTTAAAGAAGACAAAACCCTCAACTGGAGAGACTTTATCCGCTACTCTTTCAAACCTTGGAAGAGATGTTGCCCTTTGGCCTGACAAGCCCACAGATTTCA

Ace file of the UniGene sp_v2.0_unigene63347

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gb\|AAD03425.1\| contains similarity to Iron/Ascorbate family of oxidoreductases (Pfam: PF00671, Score=297.8, E=1.3e-85, N=1) [Arabidopsis thaliana] emb\|CAB40043.1\| putative Fe(II)/a	-	-	3.0e-14	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	2-oxoacid-dependent dioxygenase	-	-	4.92265e-39	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Isopenicillin N synthase	IPR002283	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P021

Fln msg: Separated hits, possible frame ERROR between 70 and 159, and overlapping frame ERROR between 380 and 370, Distance to subject end: 191 aas, your sequence is shorter than subject: 135 - 368

Fln protein: GASRTATVESIGRACRDWGSFLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKNHGVLESTMEKEMRVGREFFHLPTEEKMRYFSTDPKSHMRYSTSFNVKEDKTLNWRDFIRYSFKPWKxxxxxxPDKPTDF

Protein Length: 136

Fln nts: AGGCGCAAGCCGAACTGCGACGGTGGAATCAATCGGTCGGGCATGTCGAGACTGGGGCTCCTTCTTGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGTGAAGAATCATGGGGTTTTAGAATCCACCATGGAAAAGGAGATGCGAGTGGGGCGAGAATTTTTCCACTTGCCCACTGAGGAGAAGATGCGCTACTTCTCGACGGACCCCAAATCTCACATGCGCTATTCCACCAGCTTCAATGTTAAAGAAGACAAAACCCTCAACTGGAGAGACTTTATCCGCTACTCTTTCAAACCTTGGAAGAxxxxxxxxxxxxxxxGGCCTGACAAGCCCACAGATTTCA

Fln Alignment:

AllPineV4_rep_c77826___GASRTATVESIGRACRDWGSFLVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKNHGVLESTMEKEMRVGREFFHLPTEEKMRYFSTDPKSHMRYSTSFNVKEDKTLNWRDFIRYSFKPWKRCxxxWPDKPTDF
A9P021_______________GAGRSATVEAIGRACRDWGFFLVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKNHGVSESTMENEMRVGREFFHLPTEEKMRYFSTDHKSRMRYATSFNVKEDKTLNWRDFLRYSFKPLEEMxxxWPDKPTDF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain