SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63344

Length: 461 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene63344
CATCCAAACAGAGTGGCCTCCCTCAACCTCATTCTGATGGATCTGAGCGGTTCCATTTCTCCATCGCTCGGCAATTTGTCGTTTCTCCGCACGCTCGATCTTTCAGGGAATGCACTCACTGGTCATATCCCGCCTCAATTGGGACGCCTCTTTCGTTTGAGGGAGCTCGGGTTGGACAACAATGGCTTGGACGGAAATATCCCAACTCAACTCTGCAGTTGCAGAAATTTGACTGTTCTGGCGCTCTCCTTCAACAACCTGACCGGAATAATCCCGAGCGAGTTGGGTTCGCTTCCGCTTTTGCAAAAGCTTGACTTGGGAAAGAACGAGCTGACAGAGTATGGATTCGGTCAGCCAGTGTCTACCAAAGGAGATATTTACAGCTATGGCATTTTGTTATTGGAATGCTTACGAGGAAACGACCAACTAGTGATATGTTTTCTGGAGACTTGGACTTGCAC

Ace file of the UniGene sp_v2.0_unigene63344 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9SLE0_RICCO	-	-	1.0e-19	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	receptor kinase-like protein	-	-	1.75975e-22	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.75975e-22	62%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1618	IPR011676	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 153 - 551

Fln protein: HPNRVASLNLILMDLSGSISPSLGNLSFLRTLDLSGNALTGHIPPQLGRLFRLRELGLDNNGLDGNIPTQLCSCRNLTVLALSFNNLTGIIPSELGSLPLLQKLDLGKNELTEYGFGQPVSTKGDIYSYGILLLECLRGNDQLVICFLETWTC

Protein Length: 154

Fln nts: CATCCAAACAGAGTGGCCTCCCTCAACCTCATTCTGATGGATCTGAGCGGTTCCATTTCTCCATCGCTCGGCAATTTGTCGTTTCTCCGCACGCTCGATCTTTCAGGGAATGCACTCACTGGTCATATCCCGCCTCAATTGGGACGCCTCTTTCGTTTGAGGGAGCTCGGGTTGGACAACAATGGCTTGGACGGAAATATCCCAACTCAACTCTGCAGTTGCAGAAATTTGACTGTTCTGGCGCTCTCCTTCAACAACCTGACCGGAATAATCCCGAGCGAGTTGGGTTCGCTTCCGCTTTTGCAAAAGCTTGACTTGGGAAAGAACGAGCTGACAGAGTATGGATTCGGTCAGCCAGTGTCTACCAAAGGAGATATTTACAGCTATGGCATTTTGTTATTGGAATGCTTACGAGGAAACGACCAACTAGTGATATGTTTTCTGGAGACTTGGACTTGCAC

Fln Alignment:

AllPineV4_rep_c77821___RVASLNLILMDLSGSISPSLGNLSFLRTLDLSGNALTGHIPPQXXXXXXXXXXXLDNNGLDGNIPTQLCSCRNLTVLALSFN-NLTGIIPSELGSLPLLQKLDLGKNELT---EYGFGQPVSTKGDIYSYGIL
B8LRW5_______________RVVSLNLTGMGLQGPISPLLANLSFLRVLDLSNNSHHGYIPHDLGRLFRLRVLRLSRNRLECPIPSTICGCRLLKIISLSNNFLLNGSIPSELGLLRNLKFLWLGINKLTGSIPASFGNMSSLKNFSLGYNQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain