SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63206

Length: 250 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene63206
ATGGGGACTCTTCAGTGAACAAATTAAATAGATCCGGCATTCGGACAGTGCTAGGTGCGTACGTACGAGTTTTGGCAACAACAAATCAACTGATACGAACTTTTTTGTGTTTTCCTCCATCATTTCTGAAAGCTGAAGCGAAGCCATGGGAAAGCTTCGTGTGTACGTGGACAGAATGTCCCAGCCATCGCGCGCTGTACTTATTTTCTGCAAGGTAAATAAAATTGAATTTGAGGAACATCTTGTAAAT

Ace file of the UniGene sp_v2.0_unigene63206

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione transferase, GST 10b n=2 Tax=Arabidopsis thaliana RepID=Q9ZRR6_ARATH	-	-	1.0e-06	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	glutathione transferase 10	-	-	5.81564e-14	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	peroxisome	GO:0005777	Cellular Component	5.81564e-14	91%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A821

Fln msg: Distance to subject end: 213 aas, your sequence is shorter than subject: 35 - 248

Fln protein: MGKLRVYVDRMSQPSRAVLIFCKVNKIEFEEHLVN

Protein Length: 36

Fln nts: ATGGGGACTCTTCAGTGAACAAATTAAATAGATCCGGCATTCGGACAGTGCTAGGTGCGTACGTACGAGTTTTGGCAACAACAAATCAACTGATACGAACTTTTTTGTGTTTTCCTCCATCATTTCTGAAAGCTGAAGCGAAGCC_-_ATGGGAAAGCTTCGTGTGTACGTGGACAGAATGTCCCAGCCATCGCGCGCTGTACTTATTTTCTGCAAGGTAAATAAAATTGAATTTGAGGAACATCTTGTAAAT

Fln Alignment:

AllPineV4_rep_c77534___MGKLRVYVDRMSQPSRAVLIFCKVNKIEFEEHLVN
D5A821_______________MGKLRVYVDRMSQPSRAVLIFCMVNKIEFEEHLVN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
57			33	66	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain