SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63114

Length: 487 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene63114
GGCCATTATGAGTTCCTGGTCATGCCATTTGGTCTTTGTAATGCCCCTTCTACTTTTCAGAGCCTTATGAATGACATTCTCAAACCACATCTCAGGAAATTTGTCCTGGTCTTCTTCGATGACATCCTCATCTATGATTCTATAGTGGCACTTGGGTTGCACATCTTCAGCATGTAGATCTACTCTTGCAACAGCTCCGCAAACATAAATTATTTGTCAAGATGTCCAAGTGTTTGTTTGGCATGGAAGAAGTTGAGTATTTGGGCCACATTGTGGGGCGTGAAGGTGTCAAGGTGGACCCCAAAAAGATCCAGGCAATTAAAGAATGGCCTCAACCTAAGACCTTGAAGAGCTTGGGAGGGATTTTGGGTCTCACAGGCTATTATCGTAAATTTGTCCGCAACTATGGCCGCATAGCGAAGCCCCTCACTCAACTCCTAAAGAAAAATTCCTTCTTCTGGAATGAGGAAGCCCAACAGGCATTTAC

Ace file of the UniGene sp_v2.0_unigene63114 (antisense)

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ	-	-	54%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	52%
Blast2go	ac090485_10 retroelement	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	73%
Blast2go	binding	GO:0005488	Molecular Function	73%
Blast2go	catalytic activity	GO:0003824	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	FBD	IPR006566	-	-
Sma3	Protein of unknown function DUF594	IPR007658	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: Distance to subject end: 48 aas, your sequence is shorter than subject: 88 - 158

Fln protein: MSKCLFGMEEVEYLGHIVGREGVKVDPKKIQAIKEWPQPKTLKSLGGILGLTGYYRKFVRNYGRIAKPLTQLLKKNSFFWNEEAQQAF

Protein Length: 89

Fln nts: GGCCATTATGAGTTCCTGGTCATGCCATTTGGTCTTTGTAATGCCCCTTCTACTTTTCAGAGCCTTATGAATGACATTCTCAAACCACATCTCAGGAAATTTGTCCTGGTCTTCTTCGATGACATCCTCATCTATGATTCTATAGTGGCACTTGGGTTGCACATCTTCAGCATGTAGATCTACTCTTGCAACAGCTCCGCAAACATAAATTATTTGTCAAG_-_ATGTCCAAGTGTTTGTTTGGCATGGAAGAAGTTGAGTATTTGGGCCACATTGTGGGGCGTGAAGGTGTCAAGGTGGACCCCAAAAAGATCCAGGCAATTAAAGAATGGCCTCAACCTAAGACCTTGAAGAGCTTGGGAGGGATTTTGGGTCTCACAGGCTATTATCGTAAATTTGTCCGCAACTATGGCCGCATAGCGAAGCCCCTCACTCAACTCCTAAAGAAAAATTCCTTCTTCTGGAATGAGGAAGCCCAACAGGCATTTAC

Fln Alignment:

AllPineV4_rep_c77369___KHKLFVKMSKCLFGMEEVEYLGH--IVGREGVKVDPKKIQAIKEWPQPKTLKSLGGILGLTGYYRKFVRNYGRIAKPLTQLLKKNSFFWNEEAQQAF
P92523_______________QHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
188	33		66		0.997464
332	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain