SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63099

Length: 354 nt

UniGene Fasta

>sp_v2.0_unigene63099
CGTCGTGACCTTGGCTGTCACTCAGGGTGGAGCAAAAATATAATGAGATACGGCGTCCAGTCTATACGAAACGCAATGAAATCATTCAGACAATTCCAGATTTTTGGCTTACTGCTTTTCTAAGCCACCCTGCATTGTCCGACCTCCTGACTGAAGAAGATCAGAAGGTTTTCAAGTATTTGCAATCTCTTGATGTTGAGGATTTCAAAGATGTCAAGTCAGGATATTCCATTACGTTTGTAAGTATCAACTGTTTTCTTAGTTTAGAAACCAATGTCACCTGATATGATGCTTCACATATATGCTTGAGTGCCATTTATTGCTTAAGAATTGCAGGATGTTGCAATAGGGGAG

Ace file of the UniGene sp_v2.0_unigene63099

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00956, NAP, Nucleosome assembly protein (NAP)	-	-	3.0e-20	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	protein set	-	-	6.61413e-43	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell differentiation	GO:0030154	Biological Process	6.61413e-43	92%
Blast2go	cell proliferation	GO:0008283	Biological Process	6.61413e-43	92%
Blast2go	lateral root formation	GO:0010311	Biological Process	6.61413e-43	92%
Blast2go	histone binding	GO:0042393	Molecular Function	6.61413e-43	92%
Blast2go	chromatin binding	GO:0003682	Molecular Function	6.61413e-43	92%
Blast2go	cytoplasm	GO:0005737	Cellular Component	6.61413e-43	92%
Blast2go	nucleus	GO:0005634	Cellular Component	6.61413e-43	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleosome assembly protein (NAP)	IPR002164	-	0.0	-
Sma3	ABC transporter, conserved site	IPR017871	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NK77

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 102 aas, your sequence is shorter than subject: 94 - 257

Fln protein: S*PWLSLRVEQKYNEIRRPVYTKRNEIIQTIPDFWLTAFLSHPALSDLLTEEDQKVFKYLQSLDVEDFKDVKSGYSITFVSINCFLSLETNVT*

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGTGGAGCAAAAATATAATGAGATACGGCGTCCAGTCTATACGAAACGCAATGAAATCATTCAGACAATTCCAGATTTTTGGCTTACTGCTTTTCTAAGCCACCCTGCATTGTCCGACCTCCTGACTGAAGAAGATCAGAAGGTTTTCAAGTATTTGCAATCTCTTGATGTTGAGGATTTCAAAGATGTCAAGTCAGGATATTCCATTACGTTTGTAAGTATCAACTGTTTTCTTAGTTTAGAAACCAATGTCACCTGATATGATGCTTCACATATATGCTTGAGTGCCATTTATTGCTTAAGAATTGCAGGATGTTGCAATAGGGGAG

Fln Alignment:

AllPineV4_rep_c77342___LRVEQKYNEIRRPVYTKRNEIIQTIPDFWLTAFLSHPALSDLLTEEDQKVFKYLQSLDVEDFKDVKSGYSITF
A9NK77_______________LEVEQKYNEIRRPVYTKRNEIIQTIPDFWLTAFLSHPALSDLLTEEDQKVFKYLQSLDVEDFKDVKSGYSITF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain