SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63007

Length: 535 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene63007
CAAAGTGTGGTAGATTACAACACTAGCAGCTGAAGCCCGCCAGTCAAATAAGGACAAGTTGGAACTTCATGTATTTTCCTTGGGGTGTCGAGGCTTTTGAGATCTGTGCCAAGTTCTGCTATGGAATGTCAATCACTCTAAGTGCATTGAACATAGTGGCAATTCGATGTGCTGCTGAGTATCTTGAAATGACTGAGGACGTAGAAAAGGGAAATCTGATAGTCAAATTAGATGTCTTTCTGAATTCATGCATTTTTCACTGCTGGAAGGATTCTATCACCACATTGAAAACTACTAAGGCATTTATGCCTTGGTCTGAAGATCTCAAGATTGTCAGCCGATGCATTGATGCAATTTCTTCTAAGGCAGTGGTAAGGCCGTCAAAGGTGGATTGGTCATATACTAGAAACCTTCAGGAAAAAGAGAAAGGAACATCCCAGATTTCTGCAAACCCAACATGTGATGGAATTCAGAACCGGAAACATGATCCTGTTCCTAAAGATTGGTGGGTTGAAGACATTGCTGAGCTGGAAAT

Ace file of the UniGene sp_v2.0_unigene63007

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNV5_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	basipetal auxin transport	GO:0010540	Biological Process	72%
Blast2go	apical protein localization	GO:0045176	Biological Process	72%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	72%
Blast2go	inflorescence development	GO:0010229	Biological Process	72%
Blast2go	cotyledon development	GO:0048825	Biological Process	72%
Blast2go	late endosome	GO:0005770	Cellular Component	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 418 aas, your sequence is shorter than subject: 177 - 648

Fln protein: KCGRLQH*QLKPASQIRTSWNFMYFPWGVEAFEICAKFCYGMSITLSALNIVAIRCAAEYLEMTEDVEKGNLIVKLDVFLNSCIFHCWKDSITTLKTTKAFMPWSEDLKIVSRCIDAISSKAVVRPSKVDWSYTRNLQEKEKGTSQISANPTCDGIQNRKHDPVPKDWWVEDIAELE

Protein Length: 178

Fln nts: CAAAGTGTGGTAGATTACAACACTAGCAGCTGAAGCCCGCCAGTCAAATAAGGACAAGTTGGAACTTCATGTATTTTCCTTGGGGTGTCGAGGCTTTTGAGATCTGTGCCAAGTTCTGCTATGGAATGTCAATCACTCTAAGTGCATTGAACATAGTGGCAATTCGATGTGCTGCTGAGTATCTTGAAATGACTGAGGACGTAGAAAAGGGAAATCTGATAGTCAAATTAGATGTCTTTCTGAATTCATGCATTTTTCACTGCTGGAAGGATTCTATCACCACATTGAAAACTACTAAGGCATTTATGCCTTGGTCTGAAGATCTCAAGATTGTCAGCCGATGCATTGATGCAATTTCTTCTAAGGCAGTGGTAAGGCCGTCAAAGGTGGATTGGTCATATACTAGAAACCTTCAGGAAAAAGAGAAAGGAACATCCCAGATTTCTGCAAACCCAACATGTGATGGAATTCAGAACCGGAAACATGATCCTGTTCCTAAAGATTGGTGGGTTGAAGACATTGCTGAGCTGGAAAT

Fln Alignment:

AllPineV4_rep_c77133___PWGVEAFEICAKFCYGMSITLSALNIVAIRCAAEYLEMTEDVEKGNLIVKLDVFLNSCIFHCWKDSITTLKTTKAFMPWSEDLKIVSRCIDAISSKAVVRPSKVDWSYTRNLQEKEKGTSQISANPTCDGIQ-NRKHDPVPKDWWVEDIAEL
B8LPD8_______________PGGADAFELAAKFCYGVKLELTPINVTPLRCAAEYLEMTEEFGEGNLILKTEGFLNHVVLRSWKDSVRTLQSCECLMPLAEELNIVKKCVDSIAMKACTDPSLFGWPMTEGM--GMQGMQSTKGGVLWNGINAGTRQRTAHLDWWHEDVAEL

SNPs (tot: 3)

Position	A %	G %	T %	Probability
347	33		66	0.997452
350	66		33	0.997452
429	66	33		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain