SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62478

Length: 842 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene62478 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0739000 protein n=3 Tax=Oryza sativa RepID=Q5JNL6_ORYSJ	-	-	1.0e-08	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	mitochondrial-processing peptidase subunit alpha-like	-	-	0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L22/L17	IPR001063	-	-
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Ribosomal protein L22, bacterial-type	IPR005727	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
130		80		20	0.995493
132		80		20	0.995493
238	20			80	0.995493
242	80			20	0.995493
243	80			20	0.995493
250		25		75	0.996483
502		14		85	0.993533
503		14	85		0.993533
504	14	85			0.993533
505	14			85	0.993533
506			14	85	0.993533
509	85	14			0.993533
510	14		85		0.993533
551	16			83	0.994512
593	11	88			0.923564
732			28	71	1.0
736	33			66	1.0
737		33		66	1.0
738	33			66	1.0
740	60	40			1.0
741	60	40			1.0
744		60	40		1.0
745		60	40		1.0
746	60			40	1.0
747	60	40			1.0
752	60	40			1.0
794	75	25			0.996473
795		25	75		0.996473
796		25		75	0.996473
797	25		75		0.996473
798			75	25	0.996473
808		33	66		0.997454
809		33	66		0.997454
810	66	33			0.997454
811	66	33			0.997453

SSRs (tot: 1)

Start position	End position	Sequence	Length
446	457	GGA GGA GGA GGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain