SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62344

Length: 494 nt

Origin of reads: Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene62344
ATGGGGACACAAATTCGTCTTTGGCAATTTTCTTTTTGAGACAACCCAAGCAGAGGAGCCGGCAAAGGTTGTCCGCCATCAAGAAGTGGGACACAAAAGTCTTTTGCAGAGCGATGCCCTCTATCAGTATATATTGGGGTGTACACTGGTTACTCGCTTCTCAGCACAGCCCTTGCATTGCCCGATGATGGAAAGATTCTAGCCATGGACATCAACAGAGAGAACTATGATATCGGACTGCCTATAATTGAGAAAGCTGGAGTTGCCCACAAGATTGACTTCAGAGAGGGCCCTGCTCTGCCAGTTCTGGACGAAATGGTTAAGAATGAGGACATGCATGGATCGTTCGACTTTGTGTTCGTGGATGCCGACAAAGACAACTATCTAAACTACCACAAGCGTCTGATCGATCTGGTGAAGGTTGGAGGTCTGATTGCATATGACAACACCCTGTGCAGGCGTGTCTATTGAAACCAATCCTTGTTTCTGCTCGT

Ace file of the UniGene sp_v2.0_unigene62344 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Caffeoyl-CoA O-methyltransferase n=8 Tax=Pinaceae RepID=CAMT_PINTA	-	-	97%
FL-Next	tr=Caffeoyl CoA O-methyltransferase; Pinus pinaster (Maritime pine).	-	-	82%
Blast2go	caffeoyl o-methyltransferase	-	-	97%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	O-methyltransferase, family 3	IPR002935	-	-
Sma3	Domain of unknown function DUF292, eukaryotic	IPR005061	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: F4MKL4

Fln msg: Warning!, your query overlaps and the subject is separated, Unexpected STOP codon at 3' end. Distance to subject end: 41 aas, atg_distance in limit (1-15): atg_distance = 2, W2: There is no M at the beginning, your sequence is shorter than subject: 157 - 259

Fln protein: WGHKFVFGNFLFETTQAEEPAKVVRHQEVGHKSLLQSDALYQYxxxxxxxxxxLSTALALPDDGKILAMDINRENYDIGLPIIEKAGVAHKIDFREGPALPVLDEMVKNEDMHGSFDFVFVDADKDNYLNYHKRLIDLVKVGGLIAYDNTLCRRVY*

Protein Length: 158

Fln nts: _-_ATGGGGACACAAATTCGTCTTTGGCAATTTTCTTTTTGAGACAACCCAAGCAGAGGAGCCGGCAAAGGTTGTCCGCCATCAAGAAGTGGGACACAAAAGTCTTTTGCAGAGCGATGCCCTCTATCAGTATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCAGCACAGCCCTTGCATTGCCCGATGATGGAAAGATTCTAGCCATGGACATCAACAGAGAGAACTATGATATCGGACTGCCTATAATTGAGAAAGCTGGAGTTGCCCACAAGATTGACTTCAGAGAGGGCCCTGCTCTGCCAGTTCTGGACGAAATGGTTAAGAATGAGGACATGCATGGATCGTTCGACTTTGTGTTCGTGGATGCCGACAAAGACAACTATCTAAACTACCACAAGCGTCTGATCGATCTGGTGAAGGTTGGAGGTCTGATTGCATATGACAACACCCTGTGCAGGCGTGTCTATTGAAACCAATCCTTGTTTCTGCTCGT

Fln Alignment:

AllPineV4_rep_c74142___ETTQAEEPAKVVRHQEVGHKSLLQSDALYQYILGCTLVTRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIGVYTGYSLLSTALALPDDGKILAMDINRENYDIGLPIIEKAGVAHKIDFREGPALPVLDEMVKNEDMHGSFDFVFVDADKDNYLNYHKRLIDLVKVGGLIAYDNTL
F4MKL4_______________QTTQAEEPAKVVRHQEVGHKSLLQSDALYQYILETSVYPRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIGVYTGYSLLSTALALPDDGKILAMDINRENYDIGLPIIEKAGVAHKIDFREGPALPVLDEMVKNEDMHGSFDFVFVDADKDNYLNYHKRLIDLVKVGGLIAYDNTL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
76		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain