SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62247

Length: 316 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene62247
CGAAGAAATCGGTAGGTACAAAGTAGTTAGTCCGGCCTTATTCAGATTCACAGTAGCCAAATTTTTGAAGTGTCCCAGAGCGACGAGGAGCATTTGATGGATGGGATAAAGGCCGCGGAAGCAAGGGAACTAGACTAATAAAACGTCGAATTGCAGAAGCAGAATTCAAATCCTCTGGCAATAATTCTGCTTCTTCCAGCCCCAAAACAAAGACGATGGGGAACAAAATTGCTCGCACAACACAGGTATCGGCCTCTGAGTATTATCTTCAGGACCTACCTTCCACATACAATTTGGTTCTCAAAGAGGTTCTTGG

Ace file of the UniGene sp_v2.0_unigene62247

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoinositide-3-kinase, regulatory subunit 4, p150 n=2 Tax=Arabidopsis RepID=Q9M0E5_ARATH	-	-	1.0e-08	90%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3		IPR017442	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9H974

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 33 - 70

Fln protein: MGNKIARTTQVSASEYYLQDLPSTYNLVLKEVL

Protein Length: 34

Fln nts: CGAAGAAATCGGTAGGTACAAAGTAGTTAGTCCGGCCTTATTCAGATTCACAGTAGCCAAATTTTTGAAGTGTCCCAGAGCGACGAGGAGCATTTGATGGATGGGATAAAGGCCGCGGAAGCAAGGGAACTAGACTAATAAAACGTCGAATTGCAGAAGCAGAATTCAAATCCTCTGGCAATAATTCTGCTTCTTCCAGCCCCAAAACAAAGACG_-_ATGGGGAACAAAATTGCTCGCACAACACAGGTATCGGCCTCTGAGTATTATCTTCAGGACCTACCTTCCACATACAATTTGGTTCTCAAAGAGGTTCTTGG

Fln Alignment:

AllPineV4_rep_c73726___MGNKIARTTQVSASEYYLQDLPSTYNLVLKE
B9H974_______________MGNKIARTTQASASEYYLHDLPSSYNLVLKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain