SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62049

Length: 764 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene62049

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Translation factor GUF1 homolog, mitochondrial n=2 Tax=Malpighiales RepID=GUF1_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	gtp binding protein	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Elongation factor 4	IPR006297	-	-
Sma3	GTP-binding protein LepA, C-terminal	IPR013842	-	-

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
198	80	20			0.995493
201	80	20			0.995493
202		80	20		0.995493
203		80		20	0.995493
204		60	20	20	0.99255
208	80			20	0.995493
209			80	20	0.995493
210	80		20		0.995493
211	80		20		0.995493
214		80	20		0.995493
215	80			20	0.995493
216		20		80	0.995493
218	80	20			0.995493
219			80	20	0.995493
220		20	80		0.995493
240	80		20		0.995493
244		50		50	1.0
265		80		20	0.995493
383	83		16		0.994512
384		83		16	0.994512
385	83	16			0.994512
386	83		16		0.994512
389	16			83	0.994512
390		16		83	0.994512
394		83	16		0.994512
395	83		16		0.994512
396	83	16			0.994512
398		83	16		0.994512
399	83			16	0.994512
402		16	83		0.994512
404	83	16			0.994512
405	16	83			0.994512
410	33		66		1.0
477	80			20	0.995493
478	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain