SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61992

Length: 539 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene61992
AACTATTTGAAGTACCACGAGCGGCTGATCGATCTGGTGAAGGTTGGAGGTGTGATTGCATATGACAACACCCTGTGGAGAGGAACCGTCGCGGCTCCCCCGATGATGAGATGAACGAAGGGTTCAGAAAAGTGAGAGTTTTCACATTGGAAGTGAACAAGGTGCTTGCCGCTGATCCTCGCGTCGAGATTGCCCAAATACCAGTTGCCGATGGAATTACATTGTGCAGGCGTCTCTCTTGAACTTTATTCAGTGACCAACACTGAAGCGGCTATGGTGCCTCAAAATTCATTAGTGTCAAAACTTGGAGTAGAAACTGTTAAAATGTGTTTGTAGGCACCTAGATGATTGTTTGTGAAAGTGTGTTTGTAACGTGTTTATTGTTCCGTGTTTAAGTTGGGATTCAGATTATGTGGTAGCATTAATTGTATCGATATTTGTTGTTGTTGATGATGGTGGTGGTGGTGGTTAACGTATGCTATGCTAAGACCAAACATTGGTTTATTGGACCTAAAGAAACAAATTATTGGTTGTTTCAT

Ace file of the UniGene sp_v2.0_unigene61992

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caffeoyl-CoA O-methyltransferase n=1 Tax=Chamaecyparis obtusa var. formosana RepID=A0S6W3_CHAOB	-	-	1.0e-21	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	caffeoyl- o-methyltransferase	-	-	2.35378e-29	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Caffeoyl-CoA O-methyltransferase.	EC:2.1.1.104	-	2.35378e-29	87%

Source	KEGGs	Term	e value	Identity
Blast2go	Phenylalanine metabolism	00360	2.35378e-29	87%
Blast2go	Phenylpropanoid biosynthesis	00940	2.35378e-29	87%
Blast2go	Flavonoid biosynthesis	00941	2.35378e-29	87%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	2.35378e-29	87%
Blast2go	Biosynthesis of phenylpropanoids	01061	2.35378e-29	87%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	2.35378e-29	87%
Blast2go	Metabolic pathways	01100	2.35378e-29	87%
Blast2go	Biosynthesis of secondary metabolites	01110	2.35378e-29	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	2.35378e-29	87%
Blast2go	coumarin biosynthetic process	GO:0009805	Biological Process	2.35378e-29	87%
Blast2go	caffeoyl-CoA O-methyltransferase activity	GO:0042409	Molecular Function	2.35378e-29	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	O-methyltransferase, family 3	IPR002935	-	0.0	-
Sma3	Domain of unknown function DUF292, eukaryotic	IPR005061	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD15

Fln msg: Overlapping hits, possible frame ERROR between 123 and 99, your sequence is shorter than subject: 81 - 251

Fln protein: NYLKYHERLIDLVKVGGVIAYDNTLWRGTVAAxxxxxxxxxxRKVRVFTLEVNKVLAADPRVEIAQIPVADGITLCRRLS*

Protein Length: 82

Fln nts: AACTATTTGAAGTACCACGAGCGGCTGATCGATCTGGTGAAGGTTGGAGGTGTGATTGCATATGACAACACCCTGTGGAGAGGAACCGTCGCGGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAAAAGTGAGAGTTTTCACATTGGAAGTGAACAAGGTGCTTGCCGCTGATCCTCGCGTCGAGATTGCCCAAATACCAGTTGCCGATGGAATTACATTGTGCAGGCGTCTCTCTTGAACTTTATTCAGTGACCAACACTGAAGCGGCTATGGTGCCTCAAAATTCATTAGTGTCAAAACTTGGAGTAGAAACTGTTAAAATGTGTTTGTAGGCACCTAGATGATTGTTTGTGAAAGTGTGTTTGTAACGTGTTTATTGTTCCGTGTTTAAGTTGGGATTCAGATTATGTGGTAGCATTAATTGTATCGATATTTGTTGTTGTTGATGATGGTGGTGGTGGTGGTTAACGTATGCTATGCTAAGACCAAACATTGGTTTATTGGACCTAAAGAAACAAATTATTGGTTGTTTCAT

Fln Alignment:

AllPineV4_rep_c73108___NYLKYHERLIDLVKVGGVIAYDNTLWRGTVAAPxxxxxxxxFRKVRVFTLEVNKVLAADPRVEIAQIPVADGITLCRRLS
D5AD15_______________NYLNYHKRLIDLVKIGGVIAYDNTLWKGTVASPxxxxxxxxFRNVRLFTLEVNKALAADPRIEIAQIPVADGITLCRRLS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
391	25			75	0.996473
392		25	75		0.996473
393	25			75	0.996473
446	33			66	0.997459
447		33		66	0.997459
448	33		66		0.997459

SSRs (tot: 2)

Start position	End position	Sequence	Length
438	449	TTG TTG TTG TTG	12
454	469	TGG TGG TGG TGG TGG T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain