SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61881

Length: 1142 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61881

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CBS domain-containing protein [Arabidopsis thaliana] gb\|AAL36056.1\| AT4g33700/T16L1_190 [Arabidopsis thaliana] gb\|AAM26645.1\| AT4g33700/T16L1_190 [Arabidopsis thaliana] gb\|AEE86267.1\| CBS domain-containing protein [Arabidopsis thaliana]	-	-	63%
FL-Next	sp=DUF21 domain-containing protein At4g33700; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	cbs domain-containing protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Domain of unknown function DUF21	IPR002550	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	tRNA wybutosine-synthesis	IPR013917	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8VZI2

Fln msg: your sequence is shorter than subject: 265 - 424

Fln protein: VVTLAVTQLVDLHGNEAGKGGELTHDETTIISGALGLSEKTAEDAMTPISETFAIDVNAKLDRDLMKLILERGHSRVPVYYDQPTNIIGLVLVKNLLSIHPADEVPLKNVTIRKIPRVPADLPLYDILNEFQKGHSHMAVVVRYSEQKDQEMKKTRNTGEDVKIIVDQHSSQVAQDKPLPNKKLLKWKSLPATHTCGEDKGTPKSRRWSRAPSEDILQIAGKQLPKLAEDEEIVGIITMEDVIEEILQEEIFDETDAHDDASAK*

Protein Length: 266

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTGTGGATTTGCATGGAAATGAGGCCGGGAAAGGTGGAGAACTGACACATGATGAAACAACAATCATTTCTGGGGCTTTGGGGTTATCCGAGAAAACTGCAGAAGATGCAATGACCCCAATTTCAGAAACATTTGCTATTGATGTTAATGCAAAACTGGATAGGGACTTGATGAAGTTGATCTTAGAAAGGGGGCATAGCAGAGTGCCTGTATATTATGACCAACCTACAAATATAATTGGGTTAGTTTTGGTAAAGAATTTGCTGTCCATACATCCTGCAGATGAAGTACCCTTAAAGAATGTAACCATCCGAAAGATTCCTCGTGTTCCAGCTGATTTGCCATTGTATGATATACTGAATGAGTTTCAGAAAGGCCACAGCCATATGGCTGTAGTAGTAAGGTATTCTGAACAGAAGGATCAAGAAATGAAGAAGACAAGAAATACAGGTGAGGATGTGAAAATCATTGTGGACCAACATTCATCACAAGTTGCCCAAGACAAACCCTTACCAAATAAAAAGCTATTAAAGTGGAAAAGCCTTCCTGCTACTCACACATGTGGTGAAGATAAAGGAACACCAAAGTCAAGGCGGTGGTCTCGCGCACCGTCAGAAGATATTCTTCAAATTGCTGGTAAACAACTTCCAAAGCTTGCAGAGGATGAGGAGATCGTGGGCATAATAACAATGGAAGATGTTATCGAAGAGATTTTGCAGGAGGAGATATTTGACGAGACGGATGCTCATGACGATGCCAGTGCAAAGTAA___GCATCATATTGTTGTTAGCTTCTCACGCTTTGAAGGAATTATAGCATAAAGCAATTATAATAGCTATTTGGATGAACACATTTTTGATAGGAATTTGAAGTCCAGATATGGAAATGTGTATTGTTACTCCACCATTAGGATAAAACCTTGGAAAATATAGTCTCGCATTTTTTTATTGCGAGATATATCTTTTATGTAAATCACATGTTCGTTTGTTTTAGAATTTATTATTTAGAAGGTTTTCAATGTTGTCCATTAATTTTGAGCCCACATTGAAATTGTTTATCTAATTATGTTTCACCATATGAGTATTCTATGAAAATTCGACTTAAAAAAATATTCTACT

Fln Alignment:

AllPineV4_rep_c72404___LVDLHGNEAGKGGELTHDETTIISGALGLSEKTAEDAMTPISETFAIDVNAKLDRDLMKLILERGHSRVPVYYDQPTNIIGLVLVKNLLSIHPADEVPLKNVTIRKIPRVPADLPLYDILNEFQKGHSHMAVVVRYSEQKDQEMKKTRNTGEDVKIIVDQHSSQVAQDXXXXXXXXXXXXXXXATHTCGEDKGTPKSRRWSRAPSEDILQIAGKQLPKLAEDEEIVGIITMEDVIEEILQEEIFDET
Q8VZI2_______________LVDFHGNEAGKGGELTHDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPVYYEQPTNIIGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMAVVVRQCD-KIHPLPSKNGSVKEARVDVDSEGTPTPQERMLRTKRSLQKWKSF-PNRASSFKGGSKSKKWSKDNDADILQLNGNPLPKLAEEEEAVGIITMEDVIEELLQEEIFDET

SNPs (tot: 3)

Position	C %	G %	T %	Probability
574	83		16	0.994512
632		87	12	0.992554
642		85	14	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain