SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61874

Length: 772 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61874

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thiazole biosynthetic enzyme n=9 Tax=Pinaceae RepID=Q3V7W7_PSEMZ	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	thiazole biosynthetic enzyme	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thiamine biosynthesis Thi4 protein	IPR002922	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQF1

Fln msg: Distance to subject end: 45 aas, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning, your sequence is shorter than subject: 257 - 335

Fln protein: TSICRSSARTLVSGSIFEDRKLMSSKFGSWSSSVHGTAFPASVRHSAAAAARATPPITALYADQKYDLQSFKFEPIRESIVAREMTRRYMMDMITHADTDVVIVGAGSAGLSCAYELSKNPDVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEIGVPYDEAEDYVVVKHAALFTSTIMSQVLARPNVKLFNAVAAEDLIIKEGRVSGVVTRRYMMDMITHADTDVVIVGMIDKVPGMKALDMNAAEDAIV

Protein Length: 258

Fln nts: ACATCAATTTGTCGGTCCTCTGCTCGCACCTTGGTCTCGGGTTCGATCTTCGAGGACCGCAAATTGATGTCCTCCAAGTTCGGTTCCTGGTCATCATCCGTCCATGGCACCGCCTTCCCGGCCTCTGTGCGCCACTCGGCGGCGGCGGCGGCGCGAGCGACGCCTCCGATCACTGCTCTGTACGCGGACCAGAAATATGACCTGCAGAGCTTCAAGTTCGAGCCCATAAGGGAATCCATCGTGGCTCGGGAGATGACCCGGCGCTACATGATGGACATGATCACGCATGCCGACACCGACGTGGTGATCGTCGGCGCGGGCTCCGCTGGGCTCTCTTGCGCCTACGAGCTCAGCAAGAACCCGGACGTGAAGGTTGCTATCATCGAGCAATCGGTGAGCCCCGGTGGCGGGGCGTGGCTCGGAGGTCAGCTGTTCTCCGCCATGGTGGTGAGGAAGCCCGCTCACCTCTTCCTAGACGAGATCGGTGTCCCCTACGACGAGGCTGAGGACTACGTGGTCGTCAAGCACGCAGCGTTGTTCACCTCGACCATCATGAGCCAGGTGCTCGCCAGGCCCAATGTGAAGCTCTTCAACGCTGTGGCCGCTGAGGATCTCATCATAAAGGAGGGGCGGGTGTCCGGCGTCGTGACCCGGCGCTACATGATGGACATGATCACGCATGCCGACACCGACGTGGTGATCGTCGGCATGATCGACAAGGTGCCCGGCATGAAGGCCCTCGACATGAATGCGGCCGAGGACGCCATTGTTC

Fln Alignment:

AllPineV4_rep_c72380___SSARTLVSGSIFEDRKLMSSKFGSWSSS---VHGTXXXXXXXXXXXXXXXXXXXXXXLYADQKYDLQSFKFEPIRESIVAREMTRRYMMDMITHADTDVVIVGAGSAGLSCAYELSKNPDVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEIGVPYDEAEDYVVVKHAALFTSTIMSQVLARPNVKLFNAVAAEDLIIKEGRVSGVVTRRYMMDMITHA---------DTDVVI-------------------VGMIDKVPGMKALDMNAAEDAIV
A9NQF1_______________ASARSLVSGSILEERKLMSSKFGSLSSSCSSVHGTALQASARPSVAAVRATPAIAS-LYADRKYDLESFKFEPIRESIVAREMTRRYMMDMITHADTDVVIVGAGSAGLSCAYELSKNPDIKVAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEIGVPYDEAEDYVVIKHAALFTSTIMSKVLARPNVKLFNAVAAEDLIIKEGRVSGVVTNWALVSMNHNTQSCMDPNVMESKVVVSSCGHDGPFGATGVKRLKSVGMIDKVPGMKALDMNTAEDAIV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
292		83		16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
137	153	CGG CGG CGG CGG CGG CG	17

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain