SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61808

Length: 1110 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61808

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UPF0497 membrane protein 1 n=1 Tax=Picea sitchensis RepID=U4971_PICSI	-	-	1.99965e-42	54%
FL-Next	sp=CASP-like protein 5; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	integral membrane family protein	-	-	0.0	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant subgroup	IPR006459	-	0.0	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
568		87		12	0.992554
582		12		87	0.992554
720	7		92		0.999664
721			92	7	0.999664
761		89		10	0.999919
938	88		11		0.923564
958	14			85	0.993535
962	83			16	0.994519
1070		33	33	33	0.997748

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain