SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61780

Length: 1146 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61780

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative phosphatase n=4 Tax=Solanum lycopersicum RepID=Q8GRL8_SOLLC	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	inorganic pyrophosphatase 2-like	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	HAD-superfamily hydrolase, subfamily IB, PSPase-like	IPR006383	-	-
Sma3	Pyridoxal phosphate phosphatase-related	IPR006384	-	-
Sma3	Phosphatase PHOSPHO-type	IPR016965	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLR1

Fln msg:

Fln protein: MGCMKGSNTVIVFDFDLTIIDCDSDPWVIEQLGATPLFQALLPTLPWNTLMDKIMGELHDQGKTISDIEESLKTIPLYPETIRAIKFAFSMGCELRIVSDANMFFIKTILQAHDLLQYFTEIKTNPAFVDEKGRLRIQPFHPFTVGPPHGCSLCPPNMCKGAIIDEIMRKSLEGESGEPADKKQFIYLGDGSGDFCPSLKLRDGDHVLPRKEYPLWKLIQKNRDLVKAEVHEWSNAKDVEDLFVKLLEP*

Protein Length: 251

Fln nts: CGTCGTGACCTTGGCTGTCACACAAATCTCTGTGTTGTCTTCTCTCTGGTTTTAACTTATTCATTTTCCTTTCTGCCTGCTTGCGAAGCT_-_ATGGGATGCATGAAGGGCAGTAATACTGTGATTGTATTTGATTTCGATCTCACCATAATTGACTGTGATAGCGATCCCTGGGTGATTGAACAGCTCGGAGCCACTCCGCTCTTCCAGGCTTTGCTCCCCACGCTTCCATGGAATACTCTTATGGATAAAATAATGGGGGAGCTGCATGACCAGGGAAAGACGATAAGCGATATTGAAGAGAGTTTGAAGACCATTCCTCTGTACCCAGAAACTATAAGAGCAATCAAATTTGCCTTCTCCATGGGGTGTGAACTTCGAATTGTGAGTGATGCTAATATGTTCTTCATAAAGACCATTCTTCAAGCCCATGACCTGCTCCAATACTTCACTGAGATTAAGACAAATCCAGCATTTGTTGATGAGAAGGGGAGATTGAGGATTCAGCCTTTTCATCCCTTTACTGTAGGCCCTCCTCATGGCTGCAGCCTCTGCCCTCCTAATATGTGCAAGGGAGCAATAATAGATGAGATTATGCGAAAGTCCTTGGAAGGGGAATCAGGAGAACCAGCTGATAAAAAACAATTTATTTATCTTGGGGATGGAAGTGGAGATTTCTGCCCTTCCTTGAAGTTGAGAGATGGAGATCATGTTTTGCCCAGAAAAGAATACCCGCTGTGGAAGCTTATTCAGAAGAACCGTGATCTTGTCAAGGCTGAAGTGCATGAATGGTCTAATGCAAAAGATGTAGAAGATTTGTTTGTCAAGTTACTCGAGCCTTAA___TTATTCTAATCTCTGTCACACAAAACATATATGCTAACCCCATTTTCCTGCTCTGCATGATTACATTGATGATATGTATTGATGGCTCATATTGGTGTCTGGATGCATTGTCCATATATTTTTATAAAATTATATTCAGAAGTTTCGCTGAAAGCTCACTTCAAAGTGTGCCCTTCCAAGAGATGTACATAGATTTATTTGACTTTGAATGTCAAAGATGTTTCAATGTACATAGATTTATTTGACTCTGAAGGTCAAAGTGTTGTTTCAAATTTTTAAAATTTTAATGAAATTTTATATTTTGGC

Fln Alignment:

AllPineV4_rep_c71511___NTVIVFDFDLTIIDCDSDPWVIEQLGATPLFQALLPTLPWNTLMDKIMGELHDQGKTISDIEESLKTIPLYPETIRAIKFAFSMGCELRIVSDANMFFIKTILQAHDLLQYFTEIKTNPAFVDEKGRLRIQPFHPFTVGPPHGCSLCPPNMCKGAIIDEIMRKSLEGESGEPADKKQFIYLGDGSGDFCPSLKLRDGDHVLPRKEYPLWKLIQKNRDLVKAEVHEWSNAKDVEDLFVKLLEP
A9NLR1_______________DTVIMFDFDHTLIDCNSDPWVVNQLGATQLMDSLIKVLPWTSLMDRMMSELHQQGKTVSDIEQSLKTVPICLEMIRAIKSAHSLGCDLRIVSDANSFYIKTILKNYDLLQYFSEIHTNPASVDNDGRLRIFPYHSYTVA-SHGCELCPPNMCKGAIVDGIQR------CFPPESNKRFIYLGDGRGDFCPSLKLGSEDHVLARQEYPLWKLLGQNPDLVKAQVHSWSNAKDVEDCLCKLLMP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
948			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain