SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61424

Length: 926 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene61424 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Stress responsive alpha-beta barrel domain protein [Arabidopsis thaliana] gb\|AAD24844.1\| unknown protein [Arabidopsis thaliana] gb\|AAR24683.1\| At2g31670 [Arabidopsis thaliana] gb\|AAR25640.1\| At2g31670 [Arabidopsis thaliana] gb\|AEC08571.1\| Stress responsiv	-	-	3.0e-26	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	stress responsive alpha-beta barrel domain protein	-	-	0.0	60%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	60%
Blast2go	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	60%
Blast2go	peroxisome	GO:0005777	Cellular Component	60%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	60%
Blast2go	cytosol	GO:0005829	Cellular Component	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Stress responsive alpha-beta barrel	IPR013097	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN00

Fln msg: atg_distance in limit (1-15): atg_distance = 10,

Fln protein: MGNLREYFTVQNFLTSYNYVGIAYLQWGHCHHLGFAGNFGQAAGPFVRGGLLSPYPKTSGNPRGNWAFHKPIPKSTSFSANFSANMASLPSKVVEHVVFFKVKDGTPPEKANAMISALQGLKSLDQVLDLTAGPALRFSSGTYKYTHALHSRYKDRQSLADYSAHPQHVNVVKELVLPITDDLLALDWEADLGEPMLPSYGAIRIAVLKPKEGLADPQRFELAEILSGYKGIFPSVGQVSFGENFSPARAKGFTWGSLSLFPGGKELEELNANEEDAKIQNEKVLPQMENFVVIEYINSPTSANL*

Protein Length: 307

Fln nts: _-_ATGGGGAACCTCCGTGAATATTTCACTGTTCAGAACTTCCTAACTTCCTATAATTATGTGGGTATTGCATATCTTCAATGGGGACATTGTCATCATTTGGGTTTTGCAGGTAATTTTGGACAAGCTGCAGGACCATTTGTAAGAGGAGGGCTTTTGTCCCCATATCCGAAAACTTCAGGCAATCCCAGAGGGAATTGGGCGTTTCACAAGCCAATCCCAAAATCCACTTCATTTTCTGCAAACTTCTCTGCAAATATGGCCTCTCTGCCTTCCAAGGTTGTGGAACATGTTGTTTTCTTCAAAGTCAAAGATGGTACTCCTCCTGAAAAGGCCAATGCCATGATCTCAGCCCTGCAAGGATTGAAGTCACTGGACCAAGTGTTAGACTTAACAGCAGGTCCTGCATTGAGATTCAGTTCTGGGACTTACAAATATACTCATGCTCTGCACAGCAGATACAAGGACAGACAGAGTTTAGCGGATTATTCTGCTCATCCTCAACATGTCAATGTAGTGAAAGAGCTTGTCCTACCCATTACAGATGACTTACTTGCTCTGGACTGGGAGGCTGACCTTGGTGAGCCTATGCTACCATCTTATGGGGCCATTAGGATTGCAGTCCTTAAGCCAAAGGAGGGTCTTGCAGATCCACAGAGGTTTGAGCTGGCTGAGATCCTCAGTGGGTATAAGGGCATTTTTCCATCAGTTGGGCAGGTTAGTTTTGGTGAGAATTTTTCTCCTGCTAGGGCTAAGGGTTTTACATGGGGTTCCCTCTCACTTTTCCCCGGTGGTAAAGAGCTGGAGGAGCTTAATGCAAATGAGGAGGATGCCAAGATACAGAACGAGAAGGTTCTGCCCCAGATGGAGAATTTTGTGGTTATAGAGTACATAAACTCACCTACCTCTGCAAATTTATGA___TTCTGATA

Fln Alignment:

AllPineV4_rep_c69446___FLTSYNYVGIAYLQWGHCHHLGFAGNFGQAA--GPFVRGGLLSPYPKTSGNPRGNWAFHKPIPKXXXXXXXXXXXXXSLPSXXXXXXXXXXXKDGTPPEKANAMISALQGLKSLDQVLDLTAGPALRFSSGTYKYTHALHSRYKDRQSLADYSAHPQHVNVVKELVLPITXXXXXXXXXXXLGEPMLPSYGAIRIAVLKPKEGLADPQRFELAEILSGYKGIFPSVGQVSFGENFSPARAKGFTWGSLSLFPXXXXXXXXXXXXXXXKIQNEKVLPQMENFVVIEYINSPTSANL
B8LN00_______________FRSSYNFVGHAYLQPLTISPFRSSYIFAGDAYLQPLTISPFGSPYPKTSRNQRGNWVFPKRISRPTSFSAKFSAIMDSLPSKVVEHVVFFNIKESTPPEKVNAMISALQGLKSLDQVLELTAGPALRFSSGTYKYTHALHSRYKDKQSLAEYCAHPQHVNVGNEFVLPIVDDLLALDWEADLGEPMMPFYGAIRIAVLKPKEGLADPQRFELVEILSGYKDIIPSVGQVSFGQNFSLAWAKGFTWGFLSLFPGVKELEELNTNEEHAKIQNEKVLPQMENFVVIEYITSPNSANL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
510	91	8			0.999766
511		8	91		0.999766
602		12		18	1.0
748		16	83		0.994515
749		16	83		0.994517
786			50	50	1.0
851	33	33			0.997584
852	33	66			0.997476
853	33	66			0.997476
854		66	33		0.997476
855	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain