SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61284

Length: 1069 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene61284

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein SAR1A n=5 Tax=Embryophyta RepID=B4FPT6_MAIZE	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	gtp-binding protein sar1a	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	96%
Blast2go	cellular process	GO:0009987	Biological Process	96%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	96%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Small GTPase superfamily, SAR1-type	IPR006687	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
379	87		12		0.992554
616	80			20	0.995493
617	80		20		0.995493
618	80		20		0.995493
619			20	80	0.995493
787	83		16		0.994512
788			83	16	0.994512
789	83	16			0.994512
790	83		16		0.994512
799			16	83	0.994512
800			16	83	0.994512
810		16	83		0.994512
811			83	16	0.994512
812	83	16			0.994512
870		85	14		0.993533
872		14		85	0.993533
874		85		14	0.993533
875	85		14		0.993533
877	85	14			0.993533
878		14		85	0.993533
880	85			14	0.993533
881		85	14		0.993533
882	85		14		0.993533
884		85		14	0.993533
885	85		14		0.993533
886		85		14	0.993533
887		14		85	0.993533
888	14		85		0.993533
889		14	85		0.993533
891	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain