SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene61097

Length: 503 nt

UniGene Fasta

>sp_v2.0_unigene61097
CGCATCATGGCTCCAGATAACATGCCTTGTATTCAGCGACGCGCCTCGAATTTGGGGTTAAGCCGTTCAATGGATTCCAGAGTCGGAGAGGTCAGAAAGGTTCATGTCGTGTATTTCTTGAGCAGAGGAGGCCAGGTCGAGCATCCGCATTTGATTAAAGTTCAGCAAACGGCTTTAAACGGCTTGAGACTCAGAGATGTAAAGCGATGGTTGTCGAAAGTGCGAGGAGATGATATGCCGGATTCGTTCTCCTGGTCATATAAACGGAAATACAAAAGCAGTTATGTTTGGCAAGACTTGCGCGATGACGATCTTATCACGCCTATTAGTGACAGTGAATATGTTCTCCAAGGGTCAGAGATCTTACCGTCTCGAGATACACACAGGTGTTCATGTGATTGCCAAACGCCGGAACGGAATCGCCAGCAGTCGGGAGAACTCCGAAGCGGTGATGAGCAATCGCAATACTCAAATCTGATGTTAGAATTAGATTTTCCTCTACA

Ace file of the UniGene sp_v2.0_unigene61097

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF966 domain containing protein	-	-	9.80909e-45	47%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	0.0	58%
Blast2go	uncharacterized protein	-	-	2.40617e-30	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Vacuolar protein sorting-associated protein 62	IPR009291	-	0.0	-
Sma3	Protein of unknown function DUF966	IPR010369	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: C0P4X9

Fln msg: Distance to subject end: 268 aas, your sequence is shorter than subject: 165 - 415

Fln protein: MAPDNMPCIQRRASNLGLSRSMDSRVGEVRKVHVVYFLSRGGQVEHPHLIKVQQTALNGLRLRDVKRWLSKVRGDDMPDSFSWSYKRKYKSSYVWQDLRDDDLITPISDSEYVLQGSEILPSRDTHRCSCDCQTPERNRQQSGELRSGDEQSQYSNLMLELDFPL

Protein Length: 166

Fln nts: CGCATC_-_ATGGCTCCAGATAACATGCCTTGTATTCAGCGACGCGCCTCGAATTTGGGGTTAAGCCGTTCAATGGATTCCAGAGTCGGAGAGGTCAGAAAGGTTCATGTCGTGTATTTCTTGAGCAGAGGAGGCCAGGTCGAGCATCCGCATTTGATTAAAGTTCAGCAAACGGCTTTAAACGGCTTGAGACTCAGAGATGTAAAGCGATGGTTGTCGAAAGTGCGAGGAGATGATATGCCGGATTCGTTCTCCTGGTCATATAAACGGAAATACAAAAGCAGTTATGTTTGGCAAGACTTGCGCGATGACGATCTTATCACGCCTATTAGTGACAGTGAATATGTTCTCCAAGGGTCAGAGATCTTACCGTCTCGAGATACACACAGGTGTTCATGTGATTGCCAAACGCCGGAACGGAATCGCCAGCAGTCGGGAGAACTCCGAAGCGGTGATGAGCAATCGCAATACTCAAATCTGATGTTAGAATTAGATTTTCCTCTACA

Fln Alignment:

AllPineV4_rep_c67234___GEVRKVHVVYFLSRGGQVEHPHLIKVQQTALNGLRLRDVKRWLSKVRGDDMPDXXXXXXXXXXXXXXVWQDLRDDDLITPISDSEYVLQGSEILPSRDTHRCSCDCQTPERNRQQSGE
C0P4X9_______________GEVRRINVVYFLSRGGRSDHPHLFRVNHLSRAGVRLRDVKRWLSDLRGKDMPDNYSWSYKRKYKAGYVWQDLKDDDLVTPVSDNEYVLKGCDVRGTPPPR-----SQTPKRTCSLAGE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain