SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60553

Length: 726 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene60553

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Prephenate dehydratase n=1 Tax=Hevea brasiliensis RepID=B7X944_HEVBR	-	-	1.0e-18	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	arogenate dehydratase prephenate dehydratase chloroplastic-like	-	-	3.06545e-22	61%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arogenate dehydratase.	EC:4.2.1.91	-	3.06545e-22	61%

Source	KEGGs	Term	e value	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	3.06545e-22	61%
Blast2go	Biosynthesis of phenylpropanoids	01061	3.06545e-22	61%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	3.06545e-22	61%
Blast2go	Biosynthesis of plant hormones	01070	3.06545e-22	61%
Blast2go	Metabolic pathways	01100	3.06545e-22	61%
Blast2go	Biosynthesis of secondary metabolites	01110	3.06545e-22	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	arogenate dehydratase activity	GO:0047769	Molecular Function	3.06545e-22	61%
Blast2go	chloroplast	GO:0009507	Cellular Component	3.06545e-22	61%

Source	InterPros	Term	Type	Identity
Sma3	Prephenate dehydratase	IPR001086	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Prephenate dehydratase, conserved site	IPR018528	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
42		33		66	0.997452
96			33	66	0.997452
145	33		66		0.997452
161		33		66	0.997452
204		33		66	0.997452
247	33		66		0.997452
273	33	66			0.997452
302		33		66	0.997452
336			75	25	0.996473
367		33	66		1.0
381		66	33		0.997452
407		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain