SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60402

Length: 1066 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60402 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cysteine proteinase inhibitor n=3 Tax=Glycine max RepID=O04720_SOYBN	-	-	8.0e-31	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	cysteine inhibitor 1	-	-	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Proteinase inhibitor I25, cystatin	IPR000010	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Cystatin-related, plant	IPR006525	-	-
Sma3	Ribosomal protein L37ae/L37e, N-terminal	IPR011331	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
466	4		95		1.0
566			3	96	0.999965
584		97	2		0.97849
600	4			95	0.999984
604	4			95	0.999983
614		4		95	0.999988
616	95	4			0.999988
618		6		93	1.0
619			4	95	0.999988
623		3	96		0.986325
633		3	96		0.991825
634	96	3			0.99245
635	96	3			0.993037
658	93	2			0.983471
661		95		4	0.995055
691	95		4		0.997218
913	0	95			1.0
988	2	0	0	96	0.915167
1000	2	5	91		1.0
1007	3	96			0.982166
1008	11	1		73	1.0
1009		10	1	83	1.0
1010	3	94			0.960243
1012	79	8			1.0
1013		87		12	1.0
1014		93		6	0.999999
1015	9	88	2		1.0
1037	88	7			0.998862
1040		11	88		1.0
1042		12	88		1.0
1047	90	10			0.999898
1048	85	10	5		0.999793
1049		10		89	0.999919
1052	5	5		76	0.999894
1053	13	13	20		1.0
1054		35	14	50	1.0
1055		66	8	16	0.999991
1056		72	18	9	0.999994
1058	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain