SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60373

Length: 1903 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60373 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aspartic proteinase [Theobroma cacao]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	aspartic proteinase	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Saposin	IPR008373	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Saposin-like	IPR011001	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKS9

Fln msg:

Fln protein: MEWRRILLCFVVSLYFFSSVSCADDGLVRVGLKKKSLDLKTLRAAKASMRNGCHADALIRKFGLREGRGFESDEGDYVPLKNYLDAQYFGEIGIGTPAQTFTVIFDTGSSNLWVPSSKCYFSLACYFHSKYKASESSTYKKNGKSCDIQYGSGAISGYLSQDDVTVGDLVVKDQVFTETTREPSLTFLLAKFDGLLGLGFQEIAVDKVVPVWYNMVSQGLVKEPVFSFWMNRNSEEEAGGEIVFGGVDPEHFKGEHQYTPITRKGYWQFDMGDFLIDDQSTGFCAGGCAAIVDSGTSLLAGPSGIITQINNAIGASGIISQECKTVVSQYGDVIMELLMAQTNPQKICSQIGLCSYDGTRDVSTGIASVLEKSGEKDTMSSIGDGMCTACQMAVVWVQNQIARNQTKEQIKAYMNQLCERLPSPNGESVVDCDQISSMPTVSFSIGNKTFSLTPDQYILKVGEGSVAQCVSGFMGLDVPPPLGPIWILGDIFMGVYHTVFDYGNLRVGFAEAV*

Protein Length: 515

Fln nts: AGTGGGGATCGTAGTAGCAGAGCAGTTCGCTGGGGATCGCATCCAGAAAAGTTTTGAAG_-_ATGGAGTGGAGGAGAATACTCTTGTGTTTCGTAGTTTCGTTGTATTTTTTCTCTTCTGTTTCTTGTGCTGATGATGGACTTGTAAGGGTCGGGCTGAAGAAGAAGTCTCTGGATCTTAAAACTCTACGGGCTGCTAAAGCTTCGATGCGTAACGGCTGTCATGCGGACGCACTCATTCGGAAATTTGGTCTGCGCGAAGGTCGGGGTTTCGAGTCTGACGAGGGCGATTATGTTCCTTTGAAGAATTACTTGGACGCTCAGTATTTCGGAGAGATTGGAATTGGAACTCCAGCTCAGACTTTTACGGTCATATTTGATACCGGCAGCTCAAATCTTTGGGTGCCGTCTTCTAAATGTTACTTCTCGTTGGCTTGCTATTTCCATTCAAAGTACAAGGCATCCGAGTCAAGCACCTACAAAAAGAATGGAAAATCCTGTGATATTCAGTATGGAAGTGGTGCAATCTCTGGATACTTGTCTCAAGATGATGTCACAGTAGGGGACCTTGTTGTGAAAGACCAGGTTTTTACCGAGACAACACGGGAGCCAAGTCTAACATTCTTACTGGCCAAGTTTGATGGTCTTCTTGGGCTTGGATTTCAAGAAATTGCTGTTGACAAAGTTGTTCCAGTCTGGTATAACATGGTCAGCCAAGGGCTTGTCAAAGAACCAGTATTTTCATTTTGGATGAACAGGAATTCAGAAGAGGAAGCTGGAGGAGAGATAGTATTTGGCGGTGTCGATCCTGAACACTTCAAGGGTGAACATCAGTATACACCTATTACTCGAAAGGGTTACTGGCAGTTTGATATGGGAGACTTCCTCATTGATGATCAATCAACAGGTTTCTGTGCTGGAGGTTGTGCTGCTATTGTAGATTCTGGAACTTCTTTGCTCGCTGGTCCATCGGGCATTATAACACAAATTAACAATGCTATTGGTGCCTCGGGTATTATTAGCCAGGAATGCAAAACAGTAGTATCACAATACGGAGATGTGATTATGGAGCTCTTGATGGCACAGACAAATCCTCAGAAGATCTGCTCACAGATTGGCTTGTGCTCTTATGATGGTACAAGAGATGTTAGCACAGGAATCGCTAGTGTCTTGGAAAAATCCGGTGAAAAGGATACAATGTCGAGCATCGGTGATGGTATGTGCACTGCTTGTCAGATGGCGGTTGTGTGGGTGCAGAACCAAATTGCTCGTAACCAGACTAAGGAGCAGATTAAGGCCTATATGAATCAGCTCTGTGAACGATTGCCAAGCCCTAATGGAGAATCAGTTGTTGATTGCGATCAAATATCAAGCATGCCAACTGTTTCATTTTCGATTGGAAATAAAACATTCAGTCTCACACCAGATCAGTATATTCTTAAAGTTGGTGAAGGTTCTGTAGCGCAGTGTGTAAGTGGTTTTATGGGTTTGGATGTCCCTCCACCGTTGGGTCCTATATGGATTCTTGGAGATATTTTCATGGGCGTCTACCACACAGTGTTTGATTATGGAAACTTGAGAGTGGGATTTGCTGAAGCTGTTTGA___AGATGGACATATAATGTTATATGGCGCGACAGTGCAATATTTTTATTACTCTCTCGTGTGCAGTGTAGATGGAACCACGCATTTTACTTCAAGAATGCTTTATTTCGGTGCCCTTGTTGATACATATTCTCTTGTATAGCGAAGCTTAGTCTCTATAGATACTATTGTATATAGTTAAATATTTTGCTTAAAATCTAGATGGTAGAAGAACGCTGTTTTGGAAATTTGATACAATATGTTTTCATTCTAATTTGTATAATATAAACCAAGATATGTTCTAAGACATGTTTGCTTACAATGCT

Fln Alignment:

AllPineV4_rep_c63093___ADDGLVRVGLKKKSLDLKTLRAAKASMRNGCHADALIRKFGLREGRGF-ESDEGDYVPLKNYLDAQYFGEIGIGTPAQTFTVIFDTGSSNLWVPSSKCYFSLACYFHSKYKASESSTYKKNGKSCDIQYGSGAISGYLSQDDVTVGDLVVKDQVFTETTREPSLTFLLAKFDGLLGLGFQEIAVDKVVPVWYNMVSQGLVKEPVFSFWMNRNSEEEAGGEIVFGGVDPEHFKGEHQYTPITRKGYWQFDMGDFLIDDQSTGFCAGGCAAIVDSGTSLLAGPSGIITQINNAIGASGIISQECKTVVSQYGDVIMELLMAQTNPQKICSQIGLCSYDGTRDVSTGIASVLEKSGEKDTMSSIGDGMCTACQMAVVWVQNQIARNQTKEQIKAYMNQLCERLPSPNGESVVDCDQISSMPTVSFSIGNKTFSLTPDQYILKVGEGSVAQCVSGFMGLDVPPPLGPIWILGDIFMGVYHTVFDYGNLRVGFAEA
B8LKS9_______________ANDCLARIELKKKGLDQKTLQAARIVAREGGLSNEVNRKYGLRGGLSYSESARGEYVPLKNYLDAQYYGEIGLGTPPQKFTVIFDTGSSNLWVPSTKCYLSIACYFHSKYKASQSSSYCVNGKPFNIQYGSGSVSGYLGQDHVTAGDLVVKDQVFAEVTQEPGLTFLAAKFDGILGLGFQKISVGNVVPVWYNMVNQGLIKEPVFSFWMNRKVGDEEGGEIVFGGVDPNHFKGKHTYVPVTREGYWQFNMGDFLIGGQSTGFCSGGCAAIVDSGTSLLAGPSGIVAQINEAIGASGLASQECKSVVSQYGDLIMELLMAQTNPQKVCSQIGLCLSDGTRDVGMRIASVLEKGNEATSTSS--SGMCAACEMAVVWAKNQIARNASKDQIMTYLNQLCDRLPNPNGQAAVDCNNLSSMPTVSFTIGDRSFDLTPDQYILKVGEGSAAQCISGFMGLDVPPPMGPIWILGDVFMGVYHTVFDFGNMRVGFTEA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
143			12	87	0.992554
234	12			87	0.992554
982	91		8		0.999807
1725	75		25		0.996473
1773		33		66	0.997452
1774		33		66	0.997452
1775		33		66	0.997452
1777			66	33	0.997452
1947	33	33			0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain