SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60323

Length: 837 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene60323

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thioredoxin-like protein (Fragment) n=7 Tax=Pseudotsuga RepID=C6FC02_PSEMZ	-	-	4.0e-34	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	thioredoxin-like protein	-	-	0.0	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein disulfide-isomerase.	EC:5.3.4.1	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	protein thiol-disulfide exchange	GO:0006467	Biological Process	80%
Blast2go	protein deglutathionylation	GO:0080058	Biological Process	80%
Blast2go	protein disulfide isomerase activity	GO:0003756	Molecular Function	80%
Blast2go	cytosol	GO:0005829	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3		IPR017936	-	-
Sma3		IPR015467	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
187			33	66	0.997452
228		77		22	0.999999
260	11	88			0.991528
390	80			20	0.995493
429		42		57	1.0
453	85		14		0.993533
498	14	85			0.993533
515		33		66	1.0
520			90	10	0.90298
726	33	66			1.0
731			66	33	1.0
734	33			66	1.0
788	25			75	0.996473
789	25		75		0.996473
790	25		75		0.996473
791	25			75	0.996474
792	33	33		33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain