SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60267

Length: 867 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene60267

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S30 [Arabidopsis thaliana] ref\|NP_200478.1\| 40S ribosomal protein S30 [Arabidopsis thaliana] ref\|NP_565458.1\| 40S ribosomal protein S30 [Arabidopsis thaliana] ref\|XP_002866160.1\| 40S ribosomal protein S30 [Arabidopsis lyrata subsp. l	-	-	9.0e-19	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	40s ribosomal protein s30	-	-	3.75936e-26	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	3.75936e-26	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	3.75936e-26	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S30	IPR006846	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
308		33	66		0.997452
309	66		33		0.997452
310	66			33	0.997452
311	66	33			0.997452
317		33	66		0.997452
318	66			33	0.997452
319			66	33	0.997452
323	85			14	0.993533
325	85			14	0.993533
327	14		85		0.993533
329		85		14	0.993533
808		14		14	0.984337

SSRs (tot: 1)

Start position	End position	Sequence	Length
336	347	AAG AAG AAG AAG	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain