SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60248

Length: 609 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60248 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rare cold inducible protein (Fragment) n=4 Tax=Pinaceae RepID=C6FC72_PSEMZ	-	-	5.0e-17	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	low temprature induced-like protein	-	-	3.77976e-22	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	3.77976e-22	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteolipid membrane potential modulator	IPR000612	-	0.0	-
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
545		66	16		0.988815
546		83	16		0.994523
547		83		16	0.994523
548		83	16		0.994523
550	16			83	0.994523

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain