SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60165

Length: 1619 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60165 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type-3 n=2 Tax=Picea RepID=PSB3_PICMA	-	-	98%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	proteasome subunit beta type	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	peptidase activity	GO:0008233	Molecular Function	94%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	94%
Blast2go	proteasome complex	GO:0000502	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRN1

Fln msg:

Fln protein: MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGAFEGMYKPDMEPEELFETISQALLSSIDRDCLSGWGGHVYVVSPNQVTERTLKGRMD*

Protein Length: 206

Fln nts: CGTCATGACCTTGGCAGTAAAGCAGTCTGAAATCATTATGAGCTATAAGCTTTCTTGTTAAGGAAGTTTGATTGTCCATGTTATAAAAGGCTTTGTATGCAAAAGCCTTGCGAATCACGATATTATTTTCCAGCTTACATTATAATATTATCATAAATGGTAAAGTAAGGACCCTTTCTGGTCACAGCGAAAGCATTTTACACAGGCCAGAGAGGTCCGAACGAGGGTTTTATTTACCTTCTGAATAGTGCAACACAACAAGACTAACCGATGTCATCTTGTAGCAGAAATTTGCAGTAACAGGCGCAGAAGGACAAGAATAACTTCATTAATATACAAAGAAACGTAGCTGCAGCTTGGGGAGACAGACTCAGTTCTCTACACCCCCTAACATCTGTCTCAGCA_-_ATGTCGATATTTGAATATAATGGAAGTGCTTTGGTGGCTATGGTTGGGAAAAACTGCTTTGCCATTGCCAGTGATCGCCGTTTAGGCGTGCAACTGCAAACAATAGCTACTGATTTTCAGCGCATTTTCAAGATTCATGATAAGCTATACGTGGGTCTTTCTGGATTGGCCACAGATGTGCAGACTTTGTACCAAAGATTTGCTTTTCGCCATAAGCTTTATCAGCTGCGTGAGGAAAGAAATATGAGGCCAGAAACTTTTGCAAGTCTTGTTTCTGCGTTACTTTATGAAAAGAGGTTTGGTCCTTACTTTTGTCAACCAGTGATTGCTGGATTAGGGGAAGATGATAAACCGTTTATCTGCACCATGGATTCGATTGGTGCCAAGGAACTGGCAAAGGATTTTGTTGTAGCTGGTACTGCTGCAGAGTCACTTTATGGTGCATtcGAGggTATGTACAAGCCAGACATGGAACCGGAAGAGCTATTTGAGACAATTTCCCAGGCTTTATTGTCATCCATTGATCGTGATTGTTTGAGTGGCTGGGGAGGGCATGTTTATGTCGTGTCACCAAATCAAGTGACTGAGCGCACATTGAAGGGGCGCATGGACTGA___GCCTTTTTCTTGCAAGAGAAATTGCAGGTCTTAGCAATGTTATCGGTGGCTATTAAATGAACAGAAATGTGCTTTCATACATAGTGGAGTTAGAGTTGTTGAAATCATTAATACATTTGATGTCATTGCACAAGAAGCCATCTTTCATCACATGCCTCTCAGTTCAATCCTCTAGAGTCCAATGCAAACTGAATCTTTTCTTGCATCTCTAATCAATTTGCAATCAAGTATTTCTATGGACCAAGTTTACAAATACTCAAATTTCACTTATCCTAATTTTAAATTGATACATTTTGAGGGAGCAACATTTTCTGAAATTTTGTACTCTTATGTGAGAGACTGATTTCTTTGCTTGTTATAAATTGGTGATCCTTTTTCATGTATTGACATTCAGAAAGTAGCTACCCAGTCAATAATGCTAGTGCTGGGTGAAATATTACTCATCAAATATTTCACATCTGCAAATGAGAACCTTCGGTGCTGTAACATCTGTGAAGGAAATATTTGAAAAATGCGGTTATTTTTGTCATCTGCAGCCTGCTGCATATTATGTTACATTTTGCTTTGAGGTTTATCACATATTAGAGTTTGGCATGTTC

Fln Alignment:

AllPineV4_c61894___MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGAFEGMYKPDMEPEELFETISQALLSSIDRDCLSGWGGHVYVVSPNQVTERTLKGRMD
A9NRN1_______________MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWGGHVYVVSPNQVIERTLKGRMD

SNPs (tot: 80)

Position	A %	C %	G %	T %	Probability
350	97		2		0.979874
420		4		95	0.999532
470	3		96		0.9982
471		96	3		0.9982
473			3	94	0.992495
474	3	96			0.9982
475	1	3		94	0.992495
476	5			94	1.0
479		4	96		0.998397
483		2	4	94	0.993509
485	96			4	0.998397
493	95	4			0.998744
494	95		4		0.998744
513	97		2		0.963567
525	95	4			0.999153
532		97		2	0.949853
588	97		2		0.973353
607		97		2	0.964783
608	97		2		0.964783
792		13	86		0.999973
793	86	13			0.999973
797	13		86		0.999973
798	13	86			0.999973
846		10		90	0.90298
1199	1			89	1.0
1253	3		96		0.988939
1256			96	3	0.988939
1269	1		92		0.999986
1318	1			90	1.0
1401		3	96		0.99245
1402		3		96	0.99245
1403		3		96	0.99245
1404	3		96		0.99245
1429	92	7			1.0
1430	92	7			1.0
1431	92	7			1.0
1433	2	78		10	1.0
1434	5	85	2		0.964811
1435	8	88		2	0.999999
1436			5	94	0.998744
1437	11	85		2	1.0
1440	14	2		82	1.0
1442	17	2	80		1.0
1444	81	18			1.0
1447	18	81			1.0
1448			15	84	1.0
1449		78	15	6	1.0
1452	15			84	1.0
1453		15	84		1.0
1455	15	78		6	1.0
1457	6			78	1.0
1458		15	84		1.0
1459	7	10		82	1.0
1460		10	89		1.0
1461		17		82	1.0
1463	85	3	11		1.0
1464	85	3		11	1.0
1465	92	8			0.999718
1471	8	8		82	0.999136
1472	8			91	0.999807
1474		86	4	9	0.999642
1475			90	9	0.999842
1477	10	90			0.999898
1479	10	5	85		0.999793
1480		10	5	85	0.999793
1481		5	47		1.0
1482	61	5	5		1.0
1483		82	17		1.0
1484	5	76	17		1.0
1485	53	46			1.0
1486		46	53		1.0
1488	53		13	33	1.0
1496	44	55			1.0
1497		33	22	44	1.0
1498	22	33		44	1.0
1500		70		10	0.999999
1549		20	80		0.995493
1554		33	66		0.997452
1556	66	33			0.997452
1558			66	33	0.997455

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain