SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene60118

Length: 883 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene60118 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T961_PHYPA	-	-	48%
FL-Next	sp=S-adenosylmethionine decarboxylase proenzyme; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	protein	-	-	62%

Source	InterPros	Term	Type	Identity
Sma3	S-adenosylmethionine decarboxylase	IPR001985	-	-
Sma3	S-adenosyl-l-methionine decarboxylase leader peptide	IPR012511	-	-
Sma3	S-adenosylmethionine decarboxylase, core	IPR016067	-	-
Sma3	S-adenosylmethionine decarboxylase, conserved site	IPR018166	-	-
Sma3	S-adenosylmethionine decarboxylase subgroup	IPR018167	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NY65

Fln msg: your sequence is shorter than subject: 290 - 373

Fln protein: CHRNFSEEVKFLDHYFAHLGSKAYLMGTESHKINWHVYSAVAEEEDSNPSPTAYTLEVCMTELDRDLAAYFYKRPGNEMANEMTVSAGINTLLPNSQICDFAFEPCGYSMNSIESSGYSTIHVTPEEGYSYASFEVMGYNPRTLDLQDLLSRVAGTFNPSTLSFSIYTNDSREQSGQDPLNSWVRSALPSGYECETTSRQELQAGGIVVFHTFTKKSATSSPNSAKAPLPIFPTEEIAQTQSINKSMKDSINKNYRKGSCGLDVAATRTLQADTIPSAAAPAIDMGSRY*

Protein Length: 291

Fln nts: AATGTCACCGCAACTTCAGTGAAGAAGTGAAATTCCTGGATCACTACTTCGCCCATCTCGGCTCCAAAGCATACTTAATGGGAACCGAATCCCACAAAATAAATTGGCACGTATACTCAGCCGTTGCGGAGGAAGAGGATTCGAACCCGTCACCTACGGCTTACACACTGGAGGTATGCATGACGGAGCTCGACAGAGACCTTGCGGCGTACTTCTACAAGAGGCCCGGCAACGAGATGGCTAATGAAATGACGGTGTCCGCCGGGATCAATACTCTGCTGCCCAATTCCCAGATTTGCGATTTTGCCTTCGAACCCTGCGGCTACTCCATGAACAGCATTGAATCCAGCGGGTATTCGACCATACATGTTACACCCGAGGAGGGTTACAGTTATGCAAGCTTCGAAGTAATGGGCTACAACCCTCGAACCCTGGACCTGCAAGACCTTTTAAGCCGTGTTGCAGGTACATTCAATCCCTCTACATTGTCCTTCTCTATCTACACAAACGATTCTCGAGAACAGTCTGGACAAGATCCTCTGAATTCTTGGGTGCGTTCGGCTCTCCCAAGCGGTTATGAGTGCGAAACCACCAGCCGCCAAGAACTTCAAGCAGGAGGGATAGTAGTTTTTCATACATTCACCAAGAAATCTGCCACGTCCAGTCCAAATTCAGCTAAAGCCCCACTGCCAATATTTCCCACTGAGGAAATTGCACAGACGCAGTCAATCAACAAGAGCATGAAGGACTCCATTAATAAAAATTACAGAAAGGGCAGCTGTGGACTGGACGTTGCTGCTACCAGAACACTACAAGCCGATACAATACCCTCTGCTGCTGCTCCAGCCATTGATATGGGCAGTAGATACTGA___GCTGTCTTTCC

Fln Alignment:

AllPineV4_c61754___HRNFSEEVKFLDHYFAHLGS--KAYLMGTESHKINWHVYSAVAEEED-SNPSPTAYTLEVCMTELDRDLAAYFYKRPGNEMANEMTVSAGINTLLPNSQICDFAFEPCGYSMNSIESSGYSTIHVTPEEGYSYASFEVMGYNPRTLDLQDLLSRVAGTFNPSTLSFSIYTNDSREQSGQDPLNSWVRSALPSGYECETTSRQELQAGGIVVFHTFTKKSATSSPNSAKAPLPIFPTEE
A9NY65_______________HRSFGEEVSYLDKYFGKLGSGGKAYVMGDSGKAYNWHVYTASAEDASFEGNAPPVYTLEMCMTELDHKQASVFYKDT-SKSAVEMTLNSGISDILPESKICDFQFDPCGYSMNALEGAAISTIHVTPEDGFSYASFEAMGYNPKDCDLEALVERVLSCFRPMVFSISVHVSVDNGRS------SWTKPVFPQGYICDMTSHEALTGKSSVVYHTY-RMATDESPRST---LPLLAWEE

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
568	66		33		0.997452
728		66	33		0.997452
729	33	66			0.997452
735	33		66		0.997452
737		33		66	0.997452
738		33	66		0.997452
740	25	75			0.996477
743			75	25	0.996478
744		25		75	0.996477
745	25			75	0.996477
749	75	25			0.996477
750			25	75	0.996477

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain