SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59723

Length: 884 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene59723

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein n=1 Tax=Cryptomeria japonica RepID=Q5DWG1_CRYJA	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	thaumatin-like protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to virus	GO:0009615	Biological Process	78%
Blast2go	response to UV-B	GO:0010224	Biological Process	78%
Blast2go	systemic acquired resistance	GO:0009627	Biological Process	78%
Blast2go	regulation of anthocyanin biosynthetic process	GO:0031540	Biological Process	78%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	cell wall	GO:0005618	Cellular Component	78%
Blast2go	vacuole	GO:0005773	Cellular Component	78%
Blast2go	apoplast	GO:0048046	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	GNS1/SUR4 membrane protein	IPR002076	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	3(2),5 -bisphosphate nucleotidase HAL2	IPR006239	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin D	IPR015451	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3		IPR017973	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
288		83		16	0.994512
290		40		60	1.0
306	16	83			0.994512
312		50		50	1.0
318	50		50		1.0
358	83			16	0.994512
359	16	83			0.994512
361			50	50	1.0
362	50	50			1.0
363	50	50			1.0
367	66			33	1.0
375	50	50			1.0
382	50	50			1.0
388		83		16	0.994512
389	16		83		0.994512
407	16		83		0.994512
434	16	16	66		0.988813
436			83	16	0.994512
448			20	80	0.995493
451		80		20	0.995493
452	20		80		0.995493
463		80		20	0.995493
464		80		20	0.995493
479		25		75	0.996473
482	25			75	0.996473
484	50	50			0.999993
486	50		50		0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain