SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59648

Length: 1072 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene59648

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine-rich protein n=1 Tax=Glycine max RepID=C6ZRN5_SOYBN	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	cysteine-rich receptor-like protein kinase 10-like	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3		IPR012335	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQB9

Fln msg:

Fln protein: MGREFLNEVKLVEKIQHRNLVRLLGCCAEGSERLLVYEYLAKGSLDKNLFDPDTRRRLDWQERYNIIVGVARGLLYLHEDSQLRIIHRDIKASNILLDEKLNPKIADFGLARLFAEDETQVRTAVAGTRGYMAPEYAMQGQLSVKADVYSFGVLVLELLSGRKSIDFNLSTEMEILLEWAWGLYKSGHIMDMIDPVILETCNDHEQALRCIHIGFLCTQAQASFRPSMSTINLMLSSKLVELPDPEKPAFVSSGVNHHRKSAADSGDSDTSATISSSVSIASANTLVPPSNADASITDLVPR*

Protein Length: 304

Fln nts: GAAGCTATCCTTAACGTCTATGCA_-_ATGGGGAGGGAATTTCTGAATGAAGTTAAGCTGGTGGAGAAAATTCAACATCGAAATCTTGTGAGGTTACTGGGCTGTTGCGCAGAAGGATCAGAAAGACTGCTAGTTTACGAGTACTTAGCCAAGGGTAGCCTTGATAAAAATTTATTCGATCCAGATACACGAAGGCGCCTTGATTGGCAGGAGCGCTACAATATCATAGTTGGAGTAGCTCGTGGGCTTCTCTACTTGCACGAGGATTCTCAACTGCGGATTATTCATCGGGATATTAAAGCAAGCAACATTTTGTTGGATGAAAAGTTGAATCCAAAAATTGCAGATTTCGGCTTGGCCAGACTTTTTGCTGAAGATGAAACTCAGGTTAGGACGGCAGTTGCTGGAACTCGCGGGTATATGGCACCAGAGTATGCTATGCAGGGGCAATTGTCTGTGAAAGCTGATGTTTATAGCTTTGGGGTTCTTGTTCTGGAACTTCTGAGTGGGAGAAAAAGCATTGATTTTAACTTATCAACCGAAATGGAGATCCTGTTAGAATGGGCATGGGGATTATATAAAAGTGGACATATTATGGACATGATTGATCCAGTAATACTGGAAACTTGTAACGATCACGAACAAGCCTTGCGATGCATCCATATTGGATTCTTGTGTACACAAGCCCAAGCATCCTTTCGTCCATCAATGTCTACAATCAATTTGATGCTTTCATCTAAGCTTGTGGAATTACCAGATCCCGAAAAACCTGCTTTTGTGAGTTCGGGAGTTAACCATCACAGAAAGTCCGCCGCTGATTCTGGTGATTCAGACACATCTGCAACTATATCTTCTTCTGTATCCATAGCTTCAGCGAATACTCTCGTTCCTCCATCTAATGCTGATGCTTCAATCACGGACTTGGTACCTAGATGA___TTCCTAATCTCTGGTTATCCCTTCCTAAGCTCATCCTATCAAATCAAGGGTAGCCACGCAGAATGTAAAGATGAGTTGCACATATACAAATACAAATTGATGTGGGTTGAGTAAGCATATGGTTATTTGAGTAAGTTCA

Fln Alignment:

AllPineV4_c60735___LNEVKLVEKIQHRNLVRLLGCCAEGSERLLVYEYLAKGSLDKNLFDPDTRRRLDWQERYNIIVGVARGLLYLHEDSQLRIIHRDIKASNILLDEKLNPKIADFGLARLFAEDETQVRTAVAGTRGYMAPEYAMQGQLSVKADVYSFGVLVLELLSGRKSIDFNLSTEMEILLEWAWGLYKSGHIMDMIDPVILETCNDHEQALRCIHIGFLCTQAQASFRPSMSTINLMLSSKLVELPDPEKPAFVS
A9NQB9_______________MNEVKLVAKIQHRNLVQLLGCCVDGPERLLVYEYLPNKSLDKLLFNPERRKVLDWQKRYNIIIGVARGLLYLHQDSQLRIIHRDVKVNNILLDDKLNPKIADFGLARLFPDDETHVHTRVAGTYGYMAPEYAMLGQLSVKADVYSFGVVLLEIVSGRRNTDIRLPQEQQILLEWGWRLCNGENLLNMIDPTIVGCC-PQEQALRCIQVGLLCVQADVVNRPAMSDVVLMLSANSMGIPNPTKPAFVS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain