SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59544

Length: 432 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene59544
CTTCAATTGGGAATCGGCCAAGAGTACTTCTCCTTGGTATACCGTATTGAAGGGAATTGTAGACGATGCAGCGGACGCCGGCATTACGGACGTCTGGTTTCCGCCGCCCTCACAATCCGTCGCTACTGAAGGTTATTTGCCAGGGAAGCTCTATGATTTAGACTCATCCAAATACGGGAGCGAGCAACAACTAAAGGATGCCGTGAATGCATTCCACCAAAAGGAATTGGAACGGTGGGAGACATCGTCATAAACCATCGGTGCGGGACGAAGCGGGACGATAAAGGGTACTGGTGCGTCTTTGAGGGCGGGAAGGGGGACGGCACTCTGGACTGGGGACCCTGGGCAGTCACCGTCAACGACAAACCATATGCGTGCGGCTCCGGCCAGGCGGACACCGGCGAGGACTTCGTGTCAGCCCCGGACGTGGAC

Ace file of the UniGene sp_v2.0_unigene59544 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-amylase (Fragment) n=1 Tax=Manihot esculenta RepID=B2KIQ7_MANES	-	-	1.99965e-42	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	alpha amylase	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	sucrose catabolic process	GO:0005987	Biological Process	0.0	75%
Blast2go	starch catabolic process	GO:0005983	Biological Process	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycoside hydrolase, family 13	IPR006046	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Glycosyl hydrolase, family 13, subfamily, catalytic domain	IPR006589	-	-
Sma3	Alpha-amylase, C-terminal beta-sheet	IPR012850	-	-
Sma3	Alpha-amylase, plant	IPR013775	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUX3

Fln msg: Overlapping hits, possible frame ERROR between 223 and 220, Distance to subject end: 257 aas, your sequence is shorter than subject: 144 - 448

Fln protein: FNWESAKSTSPWYTVLKGIVDDAADAGITDVWFPPPSQSVATEGYLPGKLYDLDSSKYGSEQQLKDAVNAFHxxxIGTVGDIVINHRCGTKRDDKGYWCVFEGGKGDGTLDWGPWAVTVNDKPYACGSGQADTGEDFVSAPDVD

Protein Length: 145

Fln nts: CTTCAATTGGGAATCGGCCAAGAGTACTTCTCCTTGGTATACCGTATTGAAGGGAATTGTAGACGATGCAGCGGACGCCGGCATTACGGACGTCTGGTTTCCGCCGCCCTCACAATCCGTCGCTACTGAAGGTTATTTGCCAGGGAAGCTCTATGATTTAGACTCATCCAAATACGGGAGCGAGCAACAACTAAAGGATGCCGTGAATGCATTCCACxxxxxxxxxATTGGAACGGTGGGAGACATCGTCATAAACCATCGGTGCGGGACGAAGCGGGACGATAAAGGGTACTGGTGCGTCTTTGAGGGCGGGAAGGGGGACGGCACTCTGGACTGGGGACCCTGGGCAGTCACCGTCAACGACAAACCATATGCGTGCGGCTCCGGCCAGGCGGACACCGGCGAGGACTTCGTGTCAGCCCCGGACGTGGAC

Fln Alignment:

AllPineV4_c60519___FNWESAKSTSPWYTVLKGIVDDAADAGITDVWFPPPSQSVATEGYLPGKLYDLDSSKYGSEQQLKDAVNAFHQxGIGTVGDIVINHRCGTKRDDKGYWCVFEGGKGDGTLDWGPWAVTVNDKPYACGSGQADTGEDFVSAPDVD
A9NUX3_______________FNWESAKGSSSWYNVLKGIVEDAADAGITDVWFPPPSQSLAPEGYLPQRLYDLNSSKYGSEQELRNAVDAFHQxGIGCVGDMVINHRSGTKQDDKGMWCVFEGGKGDGRLDWGPWAVTVNDKPFACGSGQADTGGDYAAAPDID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain