SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59335

Length: 216 nt

UniGene Fasta

>sp_v2.0_unigene59335
AATAAGAAACAAGTAGTAATGGCTCTTGTTTCAATAGCGCCGTTAGTTTCCAGATCGGGCGTCCGCAAATCGTTTATCAAATCCACGACTTATGTTTCAGCTTTCTCTAAGCAACGTCCAACTGTTGCAGTTGTAAAGACAAATAAATCTGCCGGACCGATAACGATGACTTTGAGCAGTGATACGCAGAGACGCGCAGGCAATCATCATTCCAAT

Ace file of the UniGene sp_v2.0_unigene59335

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1(10),5-germacradien-4-ol synthase n=1 Tax=Pinus sylvestris RepID=B4XAK5_PINSY	-	-	1.0e-07	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	1 -germacradien-4-ol synthase	-	-	2.22364e-11	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSN7

Fln msg: Distance to subject end: 588 aas, your sequence is shorter than subject: 66 - 654

Fln protein: MALVSIAPLVSRSGVRKSFIKSTTYVSAFSKQRPTVAVVKTNKSAGPITMTLSSDTQRRAGNHHSN

Protein Length: 67

Fln nts: AATAAGAAACAAGTAGTA_-_ATGGCTCTTGTTTCAATAGCGCCGTTAGTTTCCAGATCGGGCGTCCGCAAATCGTTTATCAAATCCACGACTTATGTTTCAGCTTTCTCTAAGCAACGTCCAACTGTTGCAGTTGTAAAGACAAATAAATCTGCCGGACCGATAACGATGACTTTGAGCAGTGATACGCAGAGACGCGCAGGCAATCATCATTCCAAT

Fln Alignment:

AllPineV4_c60058___MALVSIAPLVSRSGVRKSFIKSTTYVSAFSKQRPTVAVVKTNKSAGPITMTLSSDTQRRAGNHHSN
C0PSN7_______________MALVSIAPLVSRSGVQKSLISSTNDLLSLCKPLSTIGMLRPKKYVTPITTSMSNAAQREATNQHSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain