SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene59018

Length: 291 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene59018
CTCCTCAACATCGTGGCCTTAGCTACGGGTTCAACTGCAGGGCCTTTGTTGACAAGATTTTATTTCCTGCACGGTGGATCCAAAAAATGGCTCTCATCTTGGCTAGAGACTGCTGGCTGGCCTCTTCTCCTCTTGCCTCTCTATTTATCATACAGAAAGCAGCCCAACAGAGGGAATCACATCACCCCCAACCTCTTTCTGGCTTCCTGTGGAATCGGGCTTCTCACAGGCGTCGACGATTACCTATACGCATATGGCCTCTCATTTCTGCCCGTTTCCACTTCCTGTGTC

Ace file of the UniGene sp_v2.0_unigene59018 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Purine transporter, putative n=1 Tax=Ricinus communis RepID=B9RJS5_RICCO	-	-	5.0e-21	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	purine permease	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Sodium/solute symporter, conserved site	IPR018212	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMG1

Fln msg: Distance to subject end: 242 aas, your sequence is shorter than subject: 97 - 368

Fln protein: LLNIVALATGSTAGPLLTRFYFLHGGSKKWLSSWLETAGWPLLLLPLYLSYRKQPNRGNHITPNLFLASCGIGLLTGVDDYLYAYGLSFLPVSTSCV

Protein Length: 98

Fln nts: CTCCTCAACATCGTGGCCTTAGCTACGGGTTCAACTGCAGGGCCTTTGTTGACAAGATTTTATTTCCTGCACGGTGGATCCAAAAAATGGCTCTCATCTTGGCTAGAGACTGCTGGCTGGCCTCTTCTCCTCTTGCCTCTCTATTTATCATACAGAAAGCAGCCCAACAGAGGGAATCACATCACCCCCAACCTCTTTCTGGCTTCCTGTGGAATCGGGCTTCTCACAGGCGTCGACGATTACCTATACGCATATGGCCTCTCATTTCTGCCCGTTTCCACTTCCTGTGTC

Fln Alignment:

AllPineV4_c59690___LLNIVALATGSTAGPLLTRFYFLHGGSKKWLSSWLETAGWXXXXXXXXLSYRKQPNRGNHITPNLFLASCGIGLLTGVDDYLYAYGLSFLPVSTSCV
B8LMG1_______________LLNILALALGSTAGPLLTRFYFLHGGSKRWLSSWLETAGWPLLLLPLYLSYRKQPNRENHITPKLFLACCGIGILTGADDYLYAYGLSFLPLSTASV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain