SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene58911

Length: 242 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene58911
CGTCGTGACATTGGCTCCTGCTCTCAAGCATTTGGCATGGACATGACAACATCGAAGACAATGACTTTGCTGAGCTTAATTACAGATACATAACTATAGTGACCTCAAACGAGCCATATGGAATACATGATGGTTCAAATCCCTTCTTTGATAATCGAACCGCACCTAAGTTTCATCTTAAGCAAAGAGGAGTGCACAGTGGTCATGTTCAGACAGGCATCCGAGATCCATTTTGCCTTGTA

Ace file of the UniGene sp_v2.0_unigene58911 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative inosine-uridine preferring nucleoside hydrolase [Oryza sativa Japonica Group]	-	-	2.0e-20	63%
FL-Next	tr=Putative uncharacterized protein Sb09g019990; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	68%
Blast2go	protein	-	-	1.48988e-28	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosine nucleosidase.	EC:3.2.2.7	-	1.48988e-28	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		1.48988e-28	77%
Blast2go	Inosine nucleosidase.	EC:3.2.2.2	-	1.48988e-28	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		1.48988e-28	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	adenosine catabolic process	GO:0006154	Biological Process	1.48988e-28	77%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	1.48988e-28	77%
Blast2go	response to wounding	GO:0009611	Biological Process	1.48988e-28	77%
Blast2go	inosine catabolic process	GO:0006148	Biological Process	1.48988e-28	77%
Blast2go	adenosine nucleosidase activity	GO:0047622	Molecular Function	1.48988e-28	77%
Blast2go	inosine nucleosidase activity	GO:0047724	Molecular Function	1.48988e-28	77%
Blast2go	cell wall	GO:0005618	Cellular Component	1.48988e-28	77%
Blast2go	apoplast	GO:0048046	Cellular Component	1.48988e-28	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	0.0	-
Sma3	Inosine/uridine-preferring nucleoside hydrolase domain	IPR001910	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5YXR2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 435 aas, your sequence is shorter than subject: 80 - 821

Fln protein: S*HWLLLSSIWHGHDNIEDNDFAELNYRYITIVTSNEPYGIHDGSNPFFDNRTAPKFHLKQRGVHSGHVQTGIRDPFCLV

Protein Length: 81

Fln nts: CGTCGTGACATTGGCTCCTGCTCTCAAGCATTTGGCATGGACATGACAACATCGAAGACAATGACTTTGCTGAGCTTAATTACAGATACATAACTATAGTGACCTCAAACGAGCCATATGGAATACATGATGGTTCAAATCCCTTCTTTGATAATCGAACCGCACCTAAGTTTCATCTTAAGCAAAGAGGAGTGCACAGTGGTCATGTTCAGACAGGCATCCGAGATCCATTTTGCCTTGTA

Fln Alignment:

AllPineV4_c59557___LSSIWHGHDNIEDNDFAELNYRYITIVTSNEPYGIHDGSNPFFDNRTAPKFHLKQRGVHSGHVQTGIRDPFCLV
C5YXR2_______________LASMRHGETGSRSNEFAELEYMNITVVTSNKPYGVRDGSNPFFDGRTAPKFGLQEGGVHSGHVETGIRDPFCLV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
228		33	66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain